Bombyx mandarina is widely accepted as ancestor of B. mori. Silkworms are served as well-characterized models for understanding the mechanism for the genetic regulation of development. In this study, we performed RNA-Seq analysis to examine tissue-expression of gloverin isoforms of the silk-gland, mid-gut, and fat body in B. mandarina. BLAST analysis revealed that four gloverin isoform gene sequences of B. mandarina were highly similar to B. mori. To identify the difference between two species, the expression profile of gloverin was measured by semi-RT-PCR analysis. The specific expression of gloverin isoform genes was observed mainly in the fat body from B. mori but not B. mandarina. However, all of tissues in the wild-type silkworm could induce the upregulation of compared with the B. mori. To validate the sudden increase in gloverin gene expression in the mid-gut tissue of B. mandarina, we were using qRT-PCR. Relative mRNA expression rate of gloverin at the wild-type silkworm was much higher than domestic silkworm. Comparative genomics between domesticated and wild silkworms showed different tissue-expression levels in some of immune related genes. These results are suggesting a trend toward decreasing immunity related genes expression during domestication. Further studies are needed to elucidate the silkworm domestication and an invaluable resource for wild silkworm genomics research. Hoffman, 2003;Hultmark, 2003;Kurata et al., 2006;Lemaitre, 2004). Insect AMPs are synthesized and regulated by the Toll and immune deficiency (IMD) pathways in the fat body, hemocytes, and other tissues (Bulet et al., 1999;Lemaitre and Hoffmann, 2007;Yang et al., 2015). Several AMPs, cecropin, moricin, attacin and lebocin, which have a broad spectrum of antimicrobial activities, have been identified from the silkworm, B. mori (Hara and Yamakawa, 1995a;Hara and Yamakawa, 1995b;.