The application of transgenic plants to clean up environmental pollution caused by the wastes of heavy metal mining is a promising method for removing metal pollutants from soils. However, the effect of using genetically modified organisms for phytoremediation is a poorly researched topic in terms of microbial community structures, despite the important role of microorganisms in the health of soil. In this study, a comparative analysis of the bacterial and archaeal communities found in the rhizosphere of genetically modified (GM) versus wild-type (WT) poplar was conducted on trees at different growth stages (i.e., the rhizospheres of 1.5-, 2.5-, and 3-year-old poplars) that were cultivated on contaminated soils together with nonplanted control soil. Based on the results of DNA pyrosequencing, poplar type and growth stages were associated with directional changes in the structure of the microbial community. The rate of change was faster in GM poplars than in WT poplars, but the microbial communities were identical in the 3-year-old poplars. This phenomenon may arise because of a higher rate and greater extent of metal accumulation in GM poplars than in naturally occurring plants, which resulted in greater changes in soil environments and hence the microbial habitat.Heavy metal pollution threatening human health and the ecosystem is a growing concern worldwide (55). Excessive levels of heavy metals cause serious damage to living organisms that inhabit such environments (3). Furthermore, as a result of the bioaccumulation of heavy metals over time, organisms that do not inhabit contaminated areas may also be subject to higher exposure through the food chain (67). One of the main sources of heavy metal pollution in soil, water, and sediments is the metal purification procedure, which includes mining, smelting, and the tailings from these industries (55). In Korea, approximately 1,000 metal mines have been suspended or closed in the last 30 years, with metal mine tailings amounting to about 10 million tons (40a). The leftover mine tailings contain high concentrations of heavy metals and are a major source of environmental pollution; thus, a number of physicochemical methods have been developed to prevent pollution and/or restore the ecosystem of polluted sites (51).Phytoremediation, which is the use of plants to clean up environmental pollution, has received much attention as a promising method for the removal of metal pollutants in soils (6, 66). Phytoremediation is a cost-effective and environmentally friendly approach compared to other environmentally invasive, expensive, and inefficient cleanup technologies (66). A number of plant species are capable of high-level organic compound degradation or heavy metal hyperaccumulation. Viable candidates for metal phytoremediation include the alpine pennycress Thlaspi caerulescens, the Indian mustard Brassica juncea, the sunflower Helianthusannuus, the yellow poplar Liriodendrontulipifera, and the shrub tobacco Nicotianaglaucum (6). However, slow rates of removal and incomp...