Abstract. In semi-arid Chile, rock glaciers cover a surface area that is four-times larger than that occupied by glaciers. For this reason, their role in freshwater production, transfer and storage is likely to be of primary importance, especially in this area of increasing human pressure and high rainfall variability. To understand their hydrological role now and in the future it is necessary to characterize their internal structure (e.g., internal boundaries, ice, air, water and rock content). In this paper, we present the results and interpretations of electrical resistivity and refraction seismic tomography profiles on an active (El Ternero) and inactive (El Jote) rock glacier in the Chilean Andes. These are the first in situ measurements in Estero Derecho: a natural reserve at the headwaters of the Elqui River, where the two rock glaciers are located. Within our study, we highlight the strong differences in the geophysical responses between active and inactive rock glaciers through the analysis and comparison of three different inversion schemes: individual dataset inversion, structural and petrophysical joint inversion. Moreover, we propose a diagnostic model representation for the differentiation between active and inactive rock glaciers.