To design modern materials with a specific response, the consequences of directionally dependent interactions on the self-assembly of constituent nanoparticles need to be properly understood. Directionality arises in the study of anisometric nanoparticles, where geometry has a drastic effect on the properties observed. Given the fact that magnetic interactions are inherently anisotropic, if one constructs these particles from a magnetic medium, an interesting interplay between the two sources of directionality will occur. We have investigated this scenario by exploring systems of dipolar nanocube monolayers. Using an applied analytical approach, in combination with molecular dynamics simulations, we have determined the ground state structures of individual monolayer clusters. Taking inspiration from experiments, two different fixed dipole orientations for the permanent magnetisation of the nanocubes were considered: the first aligned along the [001] crystallographic axis of each cube, and the second along the [111] axis. We discovered that the structure of the ground state is distinctly different for the two systems of permanently magnetised nanocubes; [001] cubes form dipolar chains in the ground state, whereas those with [111] orientation adopt square lattice structures. The discovered configurations in the ground state represent two different structural motifs, as yet unobserved in the ground state of other magnetic nanoparticle systems.