ABSTRACT. We examined the usefulness of PCR-based restriction fragment length polymorphism (PCR-RFLP) and species-specific PCR combined with a newly devised rapid biochemical test using microplates for identifying weakly beta-hemolytic intestinal spirochetes (WBHIS) isolated from pigs. WBHIS strains showing atypical biochemical characteristics were decisively identified at the species level by PCR-RFLP and species-specific PCR. Identification of WBHIS at the species level in routine diagnostic work will certainly contribute to clarifying the pathogenicity of WBHIS. KEY WORDS: Brachyspira, PCR-RFLP, spirochete.J. Vet. Med. Sci. 70(8): 837-840, 2008 Intestinal infections with Brachyspira species are responsible for severe economic losses in the swine industry worldwide. Brachyspira species identified in pigs include one strongly hemolytic species Brachyspira hyodysenteriae and 4 weakly beta-hemolytic intestinal spirochetes (WBHIS): B. innocens, B. pilosicoli, B. intermedia, and B. murdochii. B. hyodysenteriae is considered the most pathogenic species and causes swine dysentery [6,17]. B. pilosicoli has been linked to a milder colitis known as porcine intestinal (or colonic) spirochetosis [5,14,15]. These 4 species of weakly beta-hemolytic intestinal spirochete have a similar appearance on blood agar, and the pathogenicity of these species except B. pilosicoli is controversial. Although Kinyon and Harris [8] and Lee et al. [9] considered these species as non-pathogenic, other studies [2, 10] have provided evidence that even these species may induce enterocolitis.Our bacteriological surveys of swine suffering from swine dysentery, colitis, or diarrhea, indicated that 49 strains of WBHIS were isolated in 21 cases and B. hyodysenteriae was isolated in 101 cases. Among the 21 cases, B. hyodysenteriae was isolated with WBHIS in three cases, and B. pilosicoli and B. innocens were isolated in one case. In the remaining 17 cases, only a single species of WBHIS was isolated.Bacteriological examination of swine dysentery and related diseases is mainly focused on B. hyodysenteriae or B. pilosicoli. Moreover, precise identification of WBHIS tends to be neglected, and this may correlate to the insufficient description of their pathogenicity.The aim of this study was to evaluate the usefulness of PCR-based restriction fragment length polymorphism (PCR-RFLP) and species-specific PCR combined with biochemical tests for identifying WBHIS. Forty nine isolates of WBHIS were investigated in this study, and 4 additional type strains of Brachyspira species were included as references (Table 1).Currently, porcine Brachyspira isolates are differentiated based on phenotypic criteria, including intensity of hemolysis, indole production, hippurate hydrolysis, and the activities of α-galactosidase, α-glucosidase, and β-glucosidase [3,12].The spirochetes were streaked on trypticase soy agar (TSA; Becton Dickinson Microbiology Systems, Sparks, MD., U.S.A.) containing 5% sheep blood and incubated for three days under anaerobic conditions....