“…During branching morphogenesis, the proximal-peripheral axis of the lung is demarcated by the mutually exclusive expression of SOX2 (in conducting) and SOX9 in acinar (peripheral) buds of the embryonic lung (22,26). Consistent with present single-cell RNA studies, we found a paucity of SOX2 and other conducting airway markers in the normal alveolar epithelium (Figure 4) (26,28,(33)(34)(35)(36). In sharp contrast, SOX2 RNA was coexpressed with many AT2 cell-related gene markers (e.g., SFTPA2, CTSH, LPCAT, SCD), including goblet and basal cell-associated RNAs (e.g., P63, KRT5, 6AB, ITGB4, PAX9, MUC5AC, and MUC5B) in IPF.…”