Xanthophylls (oxygenated carotenoids) are essential components of the plant photosynthetic apparatus, where they act in photosystem assembly, light harvesting, and photoprotection. Nevertheless, the specific function of individual xanthophyll species awaits complete elucidation. In this work, we analyze the photosynthetic phenotypes of two newly isolated Arabidopsis mutants in carotenoid biosynthesis containing exclusively ␣-branch (chy1chy2lut5) or -branch (chy1chy2lut2) xanthophylls. Both mutants show complete lack of qE, the rapidly reversible component of nonphotochemical quenching, and high levels of photoinhibition and lipid peroxidation under photooxidative stress. Both mutants are much more photosensitive than npq1lut2, which contains high levels of viola-and neoxanthin and a higher stoichiometry of light-harvesting proteins with respect to photosystem II core complexes, suggesting that the content in light-harvesting complexes plays an important role in photoprotection. In addition, chy1chy2lut5, which has lutein as the only xanthophyll, shows unprecedented photosensitivity even in low light conditions, reduced electron transport rate, enhanced photobleaching of isolated LHCII complexes, and a selective loss of CP26 with respect to chy1chy2lut2, highlighting a specific role of -branch xanthophylls in photoprotection and in qE mechanism. The stronger photosystem II photoinhibition of both mutants correlates with the higher rate of singlet oxygen production from thylakoids and isolated lightharvesting complexes, whereas carotenoid composition of photosystem II core complex was not influential. In depth analysis of the mutant phenotypes suggests that ␣-branch (lutein) and -branch (zeaxanthin, violaxanthin, and neoxanthin) xanthophylls have distinct and complementary roles in antenna protein assembly and in the mechanisms of photoprotection.Carotenoids are a group of C40 terpenoid compounds with a wide distribution in several biological taxa, ranging from archaea to bacteria, fungi, algae, and higher plants. Xanthophylls form a subgroup of oxygenated carotenoids, whose importance in the oxygenic photosynthesis is well known. Xanthophylls play essential roles in higher plant photosynthesis, as components of the photosynthetic apparatus of the chloroplast. In higher plants, -carotene binds to reaction center subunits of both photosystem I (PSI) 4 and II (PSII), whereas xanthophylls are both accessory pigments and structural elements of light-harvesting complexes (Lhcs). Together with -carotene, they act both as chromophores, absorbing light energy that is used in photosynthetic electron transport, and as photoprotectants of the photosynthetic apparatus from excess light and from the reactive oxygen species (ROS) that are generated during oxygenic photosynthesis. A remarkable characteristic of higher plant xanthophylls is that they show very similar spectral properties in the visible region. This evidence is apparently incoherent with the high conservation of their relative abundance across a range of pla...