Phylogenetic and Taxonomic Relationships of Northern Far Eastern Phoxinin Minnows, Phoxinus and Rhynchocypris (Pisces, Cyprinidae), as Inferred from Allozyme and Mitochondrial 16S rRNA Sequence Analyses

Sakai, Harumi; Ito, Yukimasa; Shedko, S. V.; Safronov, Sergei N.; Фролов, С. В.; Chereshnev, I. A.; Jeon, Sang-Rin; Gotō, Akira

doi:10.2108/zsj.23.323

Cited by 37 publications

(26 citation statements)

References 16 publications

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“…leptocephalus differed slightly between the Cyt-b and D-loop-based trees. Although the previous molecular phylogenetic analyses based on protein-coding loci patterns (Kartavtsev et al, 2002; and partial ribosomal RNA sequence of mtDNA (Sakai et al, 2006) suggested that Ps. leptocephalus was the basal lineage in the Tribolodon-Pseudaspius clade, it was thought to be premature based on the present results.…”

Section: Phylogenetic Relationships Among the Far Eastern Phoxininsmentioning

confidence: 99%

“…Therefore, evolutionary history of the Leuciscinae species inhabiting the Far East is an interesting subject on phylogenetic relationships between the two phyletic groups of Leuciscinae. The phylogenetic relationships of Leuciscinae species living in the Far East partly investigated by some molecular studies (Kartavtsev et al, 2002;Sakai et al 2002Sakai et al , 2006. The three phoxinin genera form a specific clade among the Far Eastern species, and the clade is phylogenetically closer to the North American Phoxinus species than the genus Leuciscus of Far Eastern leuciscins.…”

Section: Introductionmentioning

confidence: 99%

“…Furthermore, Tribolodon and Pseudaspius species are closely related species in the Far Eastern phoxinin branch. However, the previous phylogenetic studies for the Far Eastern Leuciscinae species mainly focused on localized specimens living in the Far East (Kartavtsev et al, 2002;Sakai et al 2002Sakai et al , 2006. In addition, the other comprehensive phylogenetic studies for the Leuciscinae species have lacked the Far Eastern specimens, and have invested much effort to elucidate evolutionary history of Euprope and/or North America (Briolay et al, 1998;Zardoya and Doadrio, 1999;Cunha et al, 2002;Durand et al, 2002;Hrbek et al, 2004).…”

Section: Introductionmentioning

confidence: 99%

“…czekanowskii) live in the Far East, the taxonomy of this genus is still being discussed among taxonomists (Howes, 1985;Kim, 1997;Chereshnev, 1998;Fujita and Hosoya, 2005). Recent molecular phylogenetic studies (Ito et al, 2002;Sakai et al, 2006) suggested that the Far Eastern Phoxinus species should be classified into different genus, Rhynchocypris which was originally assigned to the Far Eastern Phoxinus species (Günther, 1889). However, considering that the specimens used in the previous studies were mainly derived from local area such as the Far East, it is necessary to examine phylogenetic relationships among the Phoxinus species by using the comprehensive specimens of Leuciscinae obtained from wide range.…”

Section: Introductionmentioning

confidence: 99%

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Genetic divergence and phylogenetic independence of Far Eastern species in subfamily Leuciscinae (Pisces: Cyprinidae) inferred from mitochondrial DNA analyses

et al. 2007

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Section: Phylogenetic Relationships Among the Far Eastern Phoxininsmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

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Genetic divergence and phylogenetic independence of Far Eastern species in subfamily Leuciscinae (Pisces: Cyprinidae) inferred from mitochondrial DNA analyses

et al. 2007

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“…The Amur River likely created confluences with the Liao River, a tributary of the paleo-Huang He River (Figure 1), as those two rivers contain freshwater fauna with a high degree of similarity (Sakai et al 2006). More detailed inferences regarding their processes of speciation and colonization require additional extensive sampling of R. sericeus and the related species throughout their distribution range.…”

Section: Discussionmentioning

confidence: 99%

Pseudo but actually genuine:Rhodeus pseudosericeusprovides insight into the phylogeographic history of the Amur bitterling

Jeon¹,

Suk²

2014

Animal Cells and Systems

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Geographic isolation and colonization events have been considered complimentary historical processes in shaping the contemporary structure of regional biotas and taxonomic diversity. Accordingly, insight regarding vicariance and geodispersal might be gained by the analysis of phylogenetic pattern of related but geographically isolated taxa. Here, we examined endangered Rhodeus pseudosericeus in the Korean Peninsula based on mitochondrial cytochrome b sequences to provide information regarding the evolutionary origin of Amur-European bitterlings, Rhodeus sericeus and Rhodeus amarus. Our data and the contemporary distribution of R. pseudosericeus indicate that founding individuals have colonized the western coast of the Korean Peninsula via the paleo-Huang He River and since been subdivided into populations isolated by drainage formation. Our phylogenetic analyses indicated that it was likely R. pseudosericeus had a sister relationship to the R. sericeus-amarus complex, indicating that the R. sericeus-amarus clade originated from the dispersal of either R. pseudosericeus or its ancestral lineage. The geodispersal scenario based on our phylogenetic analyses supports the previous hypothesis that the Amur River likely created confluences with some tributaries of the paleo-Huang He River. Overall, the present study offers new insight into the taxonomic entity of R. pseudosericeus and a more comprehensive understanding of the phylogeographic history of R. sericeus and European bitterling lineages.

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The phylogeographical pattern of the Amur minnow Rhynchocypris lagowskii (Cypriniformes: Cyprinidae) in the Qinling Mountains

Chen

2022

Ecology and Evolution

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In this study, the phylogeographical pattern of the Amur minnow (Rhynchocypris lagowskii) widely distributed in the cold freshwaters of the Qinling Mountains was examined. A total of 464 specimens from 48 localities were sequenced at a 540bp region of the mitochondrial cytochrome b (Cytb) gene, and 69 haplotypes were obtained. The mean ratio of the number of synonymous and nonsynonymous substitutions per site (dN/dS) was 0.028 and indicated purifying selection. Haplotype diversity (h) and nucleotide diversity (π) of natural populations of R. lagowskii varied widely between distinct localities. Phylogenetic trees based on Bayesian inference (BI), maximum likelihood (ML), and maximum parsimony (MP) methods, and network analysis showed five well-differentiated lineages, but these did not completely correspond to localities and geographic distribution. Meanwhile, analysis of molecular variances (AMOVA) indicated the highest proportion of genetic variation was attributed to the differentiation between populations rather than by our defined lineages.In addition, there was no significant correlation between the pairwise Fst values and geographic distance (p > .05). Based on the molecular clock calibration, the time to the most recent common ancestor (TMRCA) was estimated to have emerged from the Late Miocene to the Early Pleistocene. Finally, the results of demographic history based on the neutrality test, mismatch distribution, and Bayesian skyline plot (BSP) analyses showed that collectively, the populations were stable during the Pleistocene while one lineage (lineage E) probably underwent a slight contraction during the Middle Pleistocene and a rapid expansion from the Middle to the Late Pleistocene.Therefore, the study suggests the current phylogeographical pattern of R. lagowskii was likely shaped by geological events that led to vicariance followed by dispersal and secondary contact, river capture, and climatic oscillation during the Late Miocene to the Early Pleistocene in the Qinling Mountains.

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Phylogenetic and Taxonomic Relationships of Northern Far Eastern Phoxinin Minnows, Phoxinus and Rhynchocypris (Pisces, Cyprinidae), as Inferred from Allozyme and Mitochondrial 16S rRNA Sequence Analyses

Cited by 37 publications

References 16 publications

Genetic divergence and phylogenetic independence of Far Eastern species in subfamily Leuciscinae (Pisces: Cyprinidae) inferred from mitochondrial DNA analyses

Genetic divergence and phylogenetic independence of Far Eastern species in subfamily Leuciscinae (Pisces: Cyprinidae) inferred from mitochondrial DNA analyses

Pseudo but actually genuine:Rhodeus pseudosericeusprovides insight into the phylogeographic history of the Amur bitterling

The phylogeographical pattern of the Amur minnow Rhynchocypris lagowskii (Cypriniformes: Cyprinidae) in the Qinling Mountains

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