Phylogeny and Phylogenetic Nomenclature of the Campanulidae based on an Expanded Sample of Genes and Taxa

Tank, David C.; Donoghue, Michael J.

doi:10.1600/036364410791638306

Cited by 96 publications

(118 citation statements)

References 83 publications

(17 reference statements)

Supporting

Mentioning

Contrasting

Unclassified

Order By: Relevance

“…Within the campanulid clade, 18S ϩ 26S recover Escalloniales ϩ (Dipsacales ϩ Columelliaceae) plus (Apiales ϩ Paracryphiales) as sister to Asterales. In contrast, in Tank and Donoghue (2010) Escalloniales are sister to ((Bruniaceae ϩ Columelliaceae) ϩ Apiales ϩ (Paracryphiales ϩ Dipsacales)), but in the 18S ϩ 26S tree only Columelliaceae ϩ Dipsacales receives support above 50%. The composition and relationships within Asterales are a close match to those recovered with 17 genes and in Tank and Donoghue (2010).…”

Section: S ϩ 26s Overviewmentioning

confidence: 94%

“…In contrast, in Tank and Donoghue (2010) Escalloniales are sister to ((Bruniaceae ϩ Columelliaceae) ϩ Apiales ϩ (Paracryphiales ϩ Dipsacales)), but in the 18S ϩ 26S tree only Columelliaceae ϩ Dipsacales receives support above 50%. The composition and relationships within Asterales are a close match to those recovered with 17 genes and in Tank and Donoghue (2010). For example, Menyanthaceae, Goodeniaceae, and Calyceraceae are recovered as successive sisters to Asteraceae.…”

Section: S ϩ 26s Overviewmentioning

confidence: 94%

“…Relationships within the campanulid clade have been well studied by Tank and Donoghue (2010). Within the campanulid clade, 18S ϩ 26S recover Escalloniales ϩ (Dipsacales ϩ Columelliaceae) plus (Apiales ϩ Paracryphiales) as sister to Asterales.…”

Section: S ϩ 26s Overviewmentioning

confidence: 99%

See 2 more Smart Citations

Angiosperm Phylogeny Based on 18S/26S rDNA Sequence Data: Constructing a Large Data Set Using Next-Generation Sequence Data

Maia

Gitzendanner

Soltis

et al. 2014

International Journal of Plant Sciences

View full text Add to dashboard Cite

Section: S ϩ 26s Overviewmentioning

confidence: 94%

Section: S ϩ 26s Overviewmentioning

confidence: 94%

See 1 more Smart Citation

Angiosperm Phylogeny Based on 18S/26S rDNA Sequence Data: Constructing a Large Data Set Using Next-Generation Sequence Data

Maia

Gitzendanner

Soltis

et al. 2014

International Journal of Plant Sciences

View full text Add to dashboard Cite

“…Among flowering plants, eudicots (12 457 species) are by far the best represented and a significant portion of the eudicot species belongs to the Campanulidae (5006 species), a clade of perhaps 30 000 species that includes four major lineages: Aquifoliales, Asterales, Apiales, and Dipsacales (Tank and Donoghue 2010). The production of an agglomerative tree for campanulids was an objective of one of us (J. M. Beaulieu) before the current, broader project was conceived.…”

Section: Assembling a Literature-based Tree For Land Plantsmentioning

confidence: 99%

Synthesizing phylogenetic knowledge for ecological research

Beaulieu

Ree

Cavender‐Bares

et al. 2012

Ecology

Self Cite

View full text Add to dashboard Cite

Abstract. The demand for knowledge about the tree of life is steadily rising in ecology and other fields, but bioinformatic resources designed to meet these needs remain poorly developed. Ecologists pursuing phylogenetic insights into the organization of communities have come to rely on relatively conservative reference trees that, in general, are poorly resolved and documented. New methods for inferring very large trees by mining data from DNA sequence repositories will undoubtedly be useful in community phylogenetics but are not without limitations. Here we argue that the collective phylogenetic knowledge embodied in the literature of systematics is a valuable resource that can be tapped in assembling synthetic trees. Assembling a composite ''literature-based'' tree by the judicious grafting of clades is one way to achieve a synthesis of current knowledge, and could, under some circumstances, better represent ''what we know'' about phylogenetic relationships than results obtained from automated pipelines. We describe an approach and new software for storing and annotating trees from published studies and grafting clades together in a documented and repeatable manner. Using this agglomerative approach, we are in the process of assembling a literaturebased tree for land plants, which presently contains 14 423 species from over 259 sources. For this strategy to be maximally effective, improvements in digital infrastructure are needed to capture and deploy advances in phylogenetic knowledge as they are published.

show abstract

“…In the absence of a fossil record for the two small families, a higher resolution phylogeny is needed to assess this hypothesis. The wider phylogenetic relationships among campanulid orders have been investigated in several studies, using chloroplast markers only (Beaulieu, Tank & Donoghue, 2013; Wikström et al, 2015) or combined with nuclear ribosomal genes (ITS, 18S or 26S) (Tank & Donoghue, 2010; Beaulieu, O’Meara & Donoghue, 2013; Magallón et al, 2015), but not yet with complete chloroplast genomes.…”

Section: Introductionmentioning

confidence: 99%

The complete chloroplast genome sequence ofHelwingia himalaica(Helwingiaceae, Aquifoliales) and a chloroplast phylogenomic analysis of the Campanulidae

Yao

Liu

Tan

et al. 2016

PeerJ

View full text Add to dashboard Cite

Complete chloroplast genome sequences have been very useful for understanding phylogenetic relationships in angiosperms at the family level and above, but there are currently large gaps in coverage. We report the chloroplast genome for Helwingia himalaica, the first in the distinctive family Helwingiaceae and only the second genus to be sequenced in the order Aquifoliales. We then combine this with 36 published sequences in the large (c. 35,000 species) subclass Campanulidae in order to investigate relationships at the order and family levels. The Helwingia genome consists of 158,362 bp containing a pair of inverted repeat (IR) regions of 25,996 bp separated by a large single-copy (LSC) region and a small single-copy (SSC) region which are 87,810 and 18,560 bp, respectively. There are 142 known genes, including 94 protein-coding genes, eight ribosomal RNA genes, and 40 tRNA genes. The topology of the phylogenetic relationships between Apiales, Asterales, and Dipsacales differed between analyses based on complete genome sequences and on 36 shared protein-coding genes, showing that further studies of campanulid phylogeny are needed.

show abstract

Phylogeny and Phylogenetic Nomenclature of the Campanulidae based on an Expanded Sample of Genes and Taxa

Cited by 96 publications

References 83 publications

Angiosperm Phylogeny Based on 18S/26S rDNA Sequence Data: Constructing a Large Data Set Using Next-Generation Sequence Data

Angiosperm Phylogeny Based on 18S/26S rDNA Sequence Data: Constructing a Large Data Set Using Next-Generation Sequence Data

Synthesizing phylogenetic knowledge for ecological research

The complete chloroplast genome sequence ofHelwingia himalaica(Helwingiaceae, Aquifoliales) and a chloroplast phylogenomic analysis of the Campanulidae

Contact Info

Product

Resources

About