How cells achieve their final sizes is a pervasive biological question. One strategy to increase cell size is for the cell to amplify its chromosomal DNA content through endoreduplication cycles. Although endoreduplication is widespread in eukaryotes, we know very little about its molecular mechanisms. Successful progression of the endoreduplication cycle in Arabidopsis requires a plant homologue of archaeal DNA topoisomerase (topo) VI. To further understand how DNA is endoreduplicated and how this process is regulated, we isolated a dwarf Arabidopsis mutant, hyp7 (hypocotyl 7), in which various large cell types that in the wild type normally endoreduplicate multiple times complete only the first two rounds of endoreduplication and stall at 8C. HYP7 encodes the RHL1 (ROOT HAIRLESS 1) protein, and sequence analysis reveals that RHL1 has similarity to the C-terminal domain of mammalian DNA topo II␣, another type II topo that shares little sequence homology with topo VI. RHL1 shows DNA binding activity in vitro, and we present both genetic and in vivo evidence that RHL1 forms a multiprotein complex with plant topo VI. We propose that RHL1 plays an essential role in the topo VI complex to modulate its function and that the two distantly related topos, topo II and topo VI, have evolved a common domain that extends their function. Our data suggest that plant topo II and topo VI play distinct but overlapping roles during the mitotic cell cycle and endoreduplication cycle.endoreduplication ͉ hypocotyl ͉ root hairless T he control of cell size is a highly regulated process with inputs from genetic, hormonal, and environmental cues. Yeast and mammalian cells usually only double their size during their development; therefore, a key question in their size control is how proliferating cells coordinate cell growth and cell division to maintain size homeostasis. Yeast and many mammalian cells have a cell size checkpoint mechanism in which cells divide only when they reach a critical size (1), whereas some mammalian cells may control their size through extracellular signals (2). Although plant cells also double their cell size during proliferation, they commonly undergo an additional, massive (sometimes Ͼ1,000-fold), postmitotic cell enlargement. Such a large increase in volume is driven by a combination of production of new cytoplasmic mass and cell expansion (driven by water uptake and vacuolar growth), but little is known about the underlying mechanisms involved. Recent genetic evidence strongly supports the classical ''karyoplasmic ratio'' theory that one mechanism to increase cell size is by increasing the ploidy level within a cell, for example through endoreduplication, defined as the amplification of chromosomal DNA without corresponding cell division (3). Several mutants and transgenic plants that have aberrant levels of endoreduplication have been isolated and have led to the identification of key regulators of the endoreduplication cycle or endocycle (3-7). How these regulators control downstream events, however, rem...