The protein arginine deiminases (PADs)
catalyze the post-translational
hydrolysis of peptidyl-arginine to form peptidyl-citrulline in a process
termed deimination or citrullination. PADs likely play a role in the
progression of a range of disease states because dysregulated PAD
activity is observed in a host of inflammatory diseases and cancer.
For example, recent studies have shown that PAD2 activates ERα
target gene expression in breast cancer cells by citrullinating histone
H3 at ER target promoters. To date, all known PAD inhibitors bind
directly to the enzyme active site. PADs, however, also require calcium
ions to drive a conformational change between the inactive apo-state
and the fully active calcium bound holoenzyme, suggesting that it
would be possible to identify inhibitors that bind the apoenzyme and
prevent this conformational change. As such, we set out to develop
a screen that can identify PAD2 inhibitors that bind to either the
apo or calcium bound form of PAD2. Herein, we provide definitive proof
of concept for this approach and report the first PAD inhibitor, ruthenium
red (Ki of 17 μM), to preferentially
bind the apoenzyme.