Flower color patterns have long served as a model for developmental genetics because pigment phenotypes are visually striking, yet generally not required for plant viability, facilitating the genetic analysis of color and pattern mutants. The evolution of novel flower colors and patterns has played a key role in the adaptive radiation of flowering plants via their specialized interactions with different pollinator guilds (e.g., bees, butterflies, birds), motivating the search for allelic differences affecting flower color pattern in closely related plant species with different pollinators. We have identified LIGHT AREAS1 (LAR1), encoding an R2R3-MYB transcription factor, as the causal gene underlying the spatial pattern variation of floral anthocyanin pigmentation between two sister species of monkeyflower: the bumblebee-pollinated Mimulus lewisii and the hummingbirdpollinated Mimulus cardinalis. We demonstrated that LAR1 positively regulates FLAVONOL SYNTHASE (FLS), essentially eliminating anthocyanin biosynthesis in the white region (i.e., light areas) around the corolla throat of M. lewisii flowers by diverting dihydroflavonol into flavonol biosynthesis from the anthocyanin pigment pathway. FLS is preferentially expressed in the light areas of the M. lewisii flower, thus prepatterning the corolla. LAR1 expression in M. cardinalis flowers is much lower than in M. lewisii, explaining the unpatterned phenotype and recessive inheritance of the M. cardinalis allele. Furthermore, our gene-expression analysis and genetic mapping results suggest that cis-regulatory change at the LAR1 gene played a critical role in the evolution of different pigmentation patterns between the two species.flower color pattern | Mimulus | anthocyanins | flavonols | R2R3-MYB M any flowers display interesting color patterns (e.g., spots, stripes, picotees, bull's-eyes) that are precisely programmed during development. Numerous studies have shown that these color patterns are critically important for plant-pollinator interactions (1-8). Among the most captivating examples are deceptive orchids that display floral pigment patterns remarkably similar to female bees or wasps to lure male counterparts for pseudocopulation, thereby achieving pollination (9-11). Despite the obvious aesthetic and ecological significance of these flower color patterns, the molecular mechanisms of pigment pattern formation is not well understood, nor is the genetic basis underlying pattern variation between related species in nature.From a genetic and developmental viewpoint, the most extensively studied flower color pattern is venation. Studies in snapdragon (Antirrhinum majus) and petunia (Petunia hybrida) have revealed a conserved mechanism for the formation of vein-associated anthocyanin pigmentation pattern in petal epidermis. Pigments are only produced in the overlapping expression domains of the R2R3-MYB and bHLH coregulators of anthocyanin biosynthetic genes; the bHLH expression is confined to the petal epidermis and the R2R3-MYB expression is specific to ce...