Population data for 15 autosomal STR loci in the Miao ethnic minority from Guizhou Province, Southwest China

Zhang, Lu

doi:10.1016/j.fsigen.2014.11.002

Cited by 38 publications

(6 citation statements)

References 7 publications

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“…Principal components analysis was performed with MVSP 3.1 ( http://www.kovcomp.com ) based on allelic frequencies of the 15 autosomal STR loci. Nei’s standard genetic distances between currently studied and previously published populations (Russian 20 , Saraki Pakistan 21 , Korean 22 , Punjabi 23 , Indian 24 , Morocco 25 , Eastern Turkey 26 , Hong Kong 27 , Japanese 28 , Interior Sindh (unpublished), Hungarian 29 , South Iran 30 , Azerbaijan 31 , Turkish Cypriot 32 , Afghanistan 33 , Bangladesh 34 , Malaysia 35 , Kadazan Malaysia 36 , Sindh Pakistan 37 , Iraq 38 , Pashtuns Afghanistan 39 , Tajik Afghanistan 39 , Uzbek Afghanistan 39 , Turkmen Afghanistan 39 , Mongols of Mongolia 40 , Hazara Afghanistan 39 , Kuala Lumpur Malaysia 41 , Miao 42 , East Mongolia of China 43 , Dong 44 , Bouyei 45 , Han Liaoning 46 , Manchu Liaoning 47 , Hui Qinghai 48 , Uyghur China 49 , Russian in China 50 , Dongxiang Qinghai 51 , Salar Qinghai 51 , Kazakh China 13 ) were generated using the Phylip 3.69 package 52 and visualized with Mega7 software 53 .…”

Section: Methodsmentioning

confidence: 99%

RETRACTED ARTICLE: Forensic characterization of 15 autosomal STRs in four populations from Xinjiang, China, and genetic relationships with neighboring populations

Zhan

Adnan

Yu-zhang

et al. 2018

Sci Rep

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The Xinjiang Uyghur Autonomous Region of China (XUARC) harbors 47 ethnic groups including the Manchu (MCH: 0.11%), Mongols (MGL: 0.81%), Kyrgyz (KGZ: 0.86%) and Uzbek (UZK: 0.066%). To establish DNA databases for these populations, allele frequency distributions for 15 autosomal short tandem repeat (STR) loci were determined using the AmpFlSTR Identifiler PCR amplification kit. There was no evidence of departures from Hardy–Weinberg equilibrium (HWE) in any of the four populations and minimal departure from linkage equilibrium (LE) for a very small number of pairwise combinations of loci. The probabilities of identity for the different populations ranged from 1 in 1.51 × 1017 (MCH) to 1 in 9.94 × 1018 (MGL), the combined powers of discrimination ranged from 0.99999999999999999824 (UZK) to 0.9999999999999999848 (MCH) and the combined probabilities of paternal exclusion ranged from 0.9999979323 (UZK) to 0.9999994839 (MCH). Genetic distances, a phylogenetic tree and principal component analysis (PCA) revealed that the MCH, KGZ and UZK are genetically closer to the Han population of Liaoning and the Mongol population of Mongolia while the MGL are closer to Han, Japanese, Korean, Malaysian, Hong Kong Han and Russians living in China.

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Section: Methodsmentioning

confidence: 99%

RETRACTED ARTICLE: Forensic characterization of 15 autosomal STRs in four populations from Xinjiang, China, and genetic relationships with neighboring populations

Zhan

Adnan

Yu-zhang

et al. 2018

Sci Rep

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“…Our genomic evidence based on PCA, Admixture, pairwise F ST , TreeMix, and allele-sharing-based f -statistics suggests that, fitting for their common linguistic affiliations, HM speakers had a strong genetic affinity with SEAs, especially neighboring TK speakers, which was consistent with the genetically close relationships revealed via low-density genetic markers and genome-wide SNP data from other Miao tribes from Southwest China (Zhang et al 2015; Chen et al 2018, 2019a, 2019b; Han et al 2019; Zhang et al 2019; Fan et al 2020; Feng et al 2020; Tang et al 2020; Huang et al in press; Luo et al 2021).…”

Section: Discussionsupporting

confidence: 77%

Fine-Scale Genetic Profile and Admixture History of Two Hmong-Mien–Speaking Miao Tribes from Southwest China Inferred from Genome-wide Data

Tan¹,

Wang*²,

Wang*³

2022

hub

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As the dominant indigenous minority in southern China, Hmong-Mien-speaking Miao people were thought to be the descendants of Neolithic Yangtze rice farmers. However, the fine-scale population structure and genetic profile of the Miao populations remain unclear due to the limited Miao samples from southern China and Southeast Asia. We genotyped 19 individuals from the two largest Miao tribes in Guizhou Province (Southwest China) via SNP chips and co-analyzed the data with published modern and ancient East Asians. The Guizhou Miao displayed a closer genomic affinity with present-day and Neolithic to Iron Age southern East Asians (SEAs) than with most northern East Asians (NEAs). The genetic substructure within Miao groups was driven by different levels of genetic interaction with other ethnolinguistic groups: Hunan Miao (Central China) harbored higher proportions of NEA-related ancestry; Guizhou Miao (Southwest China) and Vietnam Miao (mainland Southeast Asia) received additional gene flow mainly from surrounding groups with Tai-Kadai–related ancestry. There were also more complex admixture events in the newly studied groups between Guizhou Xijiang Miao and surrounding populations compared with Guizhou Congjiang Miao. The qpAdm model further demonstrated that the primary ancestry of Hunan Miao, Guizhou Miao studied here, and Vietnam Miao derived from ancient SEA-related ancestry (represented by coastal early Neolithic SEA Liangdao2), with the additional gene flow from ancient NEA-related ancestry (represented by spatiotemporally inland Yellow River farmers), with slightly different proportions. Our genomic evidence reveals the complex and distinct demographic history of different Miao tribes.

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“…The genetic polymorphism of some province of mainland china has been reported from many studies (Gao et al 2014; He and Guo 2013; Hou et al 2013; Sun et al 2014; Wang et al 2014; Wang et al 2013; Weng et al 2013; Zhang et al 2014) and the mutation of population from some area of mainland has been also analyzed by some researcher (Brinkmann et al 1998; Weng, Liu, Liu, Li, Liu, Wang 2013; Yan, Liu, Tang, Zhang, Huo, Hu, Yu 2006; Zhao et al 2007). However, little is known about population genetics and mutation of whole mainland china.…”

Section: Discussionmentioning

confidence: 99%

Mutation rate estimation for 15 autosomal STR loci in a large population from Mainland China

Zhao¹,

Wang²,

Zhang³

et al. 2015

Preprint

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STR, short tandem repeats, are well known as a type of powerful genetic marker and widely used in studying human population genetics. Compared with the conventional genetic markers, the mutation rate of STR is higher. Additionally, the mutations of STR loci do not lead to genetic inconsistencies between the genotypes of parents and children; therefore, the analysis of STR mutation is more suited to assess the population mutation. In this study, we focused on 15 autosomal STR loci. DNA samples from a total of 42,416 unrelated healthy individuals (19,037 trios) from the population of Mainland China collected between Jan 2012 and May 2014 were successfully investigated. In our study, the allele frequencies, paternal mutation rates, maternal mutation rates and average mutation rates were detected. Furthermore, we also investigated the relationship between paternal ages, maternal ages, area, the time of pregnancy and average mutation rate. We found that the paternal mutation rate was higher than the maternal mutation rate and the paternal, maternal, and average mutation rates had a positive correlation with paternal age, maternal age and the time of pregnancy respectively. Additionally, the average mutation rate of coastal areas was higher than that of inland areas.

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Population data for 15 autosomal STR loci in the Miao ethnic minority from Guizhou Province, Southwest China

Cited by 38 publications

References 7 publications

RETRACTED ARTICLE: Forensic characterization of 15 autosomal STRs in four populations from Xinjiang, China, and genetic relationships with neighboring populations

RETRACTED ARTICLE: Forensic characterization of 15 autosomal STRs in four populations from Xinjiang, China, and genetic relationships with neighboring populations

Fine-Scale Genetic Profile and Admixture History of Two Hmong-Mien–Speaking Miao Tribes from Southwest China Inferred from Genome-wide Data

Mutation rate estimation for 15 autosomal STR loci in a large population from Mainland China

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