Posttranslational N-terminal protein arginylation, mediated by Arg-tRNA-protein transferase 1 (ATE1), is essential for cardiovascular development and angiogenesis in mammals but is nonessential in yeast. Evidence suggests that many proteins are arginylated in vivo in both mammals and yeast; however, in yeast, N-terminal arginylation can occur only on proteins bearing an N-terminal Asp or Glu, whereas in mammals, N-terminal Cys residues are also arginylation targets, suggesting that Cys arginylation contributes to the essential role of ATE1 in mammals. To date, all of the characterized forms of ATE1 in yeast and mammals have been shown to arginylate only Asp and Glu, leaving open to speculation whether Cys arginylation is possible only through other components of mammalian arginylation machinery and whether Cysspecific forms of Arg-transferase exist in mammals. Here, we report the identification of two forms of Arg-transferase in mice that are specific for N-terminal Cys. We also show that the two previously identified mammalian forms of ATE1 can arginylate Cys-containing substrates in addition to Asp-and Glu-containing substrates. This finding provides insights into the significance of Cys-specific protein arginylation in mammals and suggests possibilities of the determinants of substrate specificity within the ATE1 molecule.Arg-tRNA-protein transferase ͉ N-terminal protein modifications P osttranslational incorporation of Arg into proteins was discovered Ϸ40 years ago (1); however, unlike other posttranslational modifications, protein arginylation has remained a mystery. Arginylation is mediated by Arg-tRNA-protein transferase 1 (ATE1) (2, 3), which transfers Arg from tRNA onto the N terminus of proteins, forming a peptide bond. ATE1 is an evolutionarily conserved enzyme, present in multiple species. Yeast ATE1 specifically arginylates proteins bearing an Asp or Glu residue at the N terminus, and no other recognition sequence is apparently necessary for the arginylation reaction to occur (4). Yeast ATE1 is a soluble protein of Ϸ50 kDa, with conserved Cys residues in positions 20, 23, and 94͞95 that are critical for its activity (5, 6).Studies of protein arginylation in mammalian systems have revealed that, in addition to Asp and Glu, N-terminal Cys residues can also be arginylated (7), suggesting a more complex role for mammalian protein arginylation. Furthermore, it has been found that, unlike invertebrates and unicellular organisms, mammalian species contain more than one form of ATE1, produced by alternative splicing from a single gene. Mouse ATE1-1 and ATE1-2, identical except for a single exon substitution in the middle of the molecule, have different activity, tissue specificity, and intracellular localization; however, they both have been found to arginylate only Asp-and Glu-containing substrates in a yeast complementation assay (8). The questions of whether they can also arginylate Cys and whether other Cys-specific ATE1 forms exist in higher species have remained unsolved.Evidence indicates that many p...