Increasing food production and security has become the main focus in facing global challenges. In this context, cultivating shallots (Allium cepa var. aggregatum) with a sustainable approach is critical to meeting sustainable food needs. Shallot is one of the horticultural crops that contribute significantly to farmers’ food needs, income, economy, and food supply in Indonesia. However, conventional shallot cultivation practices often face problems such as soil degradation, ecosystem damage, and dependence on synthetic chemicals. Therefore, sustainable shallot cultivation is vital to increase productivity, yield quality, and environmental sustainability. This article provides information and examines a sustainable systems approach in shallot cultivation involving organic farming practices, efficient water management, integrated weed control, and biological protection against diseases and pests. The use of varieties that are resistant to diseases and pests, as well as adaptive to climate change, are also important factors in sustainable shallot cultivation. In this case, technology and innovation in plant breeding can provide solutions to produce more resilient and productive shallot varieties. Sustainable shallot cultivation offers economic benefits for farmers and maintains environmental sustainability and food availability for the community. Therefore, collaboration between the government, farmers, research institutions, and the private sector is key in encouraging the adoption of sustainable practices in shallot cultivation.