Practice meets Principle: Tracking Software and Data Citations to Zenodo DOIs

Sandt, Stephanie van de; Nielsen, Lars Holm; Ioannidis, Alexandros; Muench, August; Henneken, Edwin A.; Accomazzi, Alberto; Bigarella, Chiara; Lopez, Jose Benito Gonzalez; Dallmeier-Tiessen, Sünje

doi:10.48550/arxiv.1911.00295

Cited by 4 publications

(2 citation statements)

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“…As discussed above, the monolithic approach lends itself more to focus attention on a smaller set of developers and maintainers, even though a larger group might be contributing functionality. A federated approach opens the option to include more developers in lead roles as package maintainers, and provides more opportunities to disseminate the functionality in independent articles (e.g., Lumnitz et al 2020) or other venues, such as citable software releases through zenodo (van de Sandt et al 2019). This ensures the community is healthy, broad, well-integrated, and provides incentives to grow in diversity and functionality (Wolf, Rey, and Oshan 2019).…”

Section: A "Federated" Solutionmentioning

confidence: 99%

ThePySALEcosystem: Philosophy and Implementation

Rey

Anselin

Amaral

et al. 2021

Geographical Analysis

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PySAL is a library for geocomputation and spatial data science. Written in Python, the library has a long history of supporting novel scholarship and broadening methodological impacts far afield of academic work. Recently, many new techniques, methods of analyses, and development modes have been implemented, making the library much larger and more encompassing than that previously discussed in the literature. As such, we provide an introduction to the library as it stands now, as well as the scientific and conceptual underpinnings of its core set of components. Finally, we provide a prospective look at the library's future evolution.

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Section: A "Federated" Solutionmentioning

confidence: 99%

ThePySALEcosystem: Philosophy and Implementation

Rey

Anselin

Amaral

et al. 2021

Geographical Analysis

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“…There is increasing awareness that software is a valid research output and should be treated as such [21,35]. Thus, software is increasingly published in public repositories or software journals [34]. This is a necessary step in transferring the FAIR principles to software [5] -i.e., for finding, understanding, reusing, sharing and citing software -and promoting it to first class research citizenship.…”

Section: Introductionmentioning

confidence: 99%

Software publications with rich metadata: state of the art, automated workflows and HERMES concept

Druskat¹,

Bertuch²,

Juckeland³

et al. 2022

Preprint

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To satisfy the principles of FAIR software, software sustainability and software citation, research software must be formally published. Publication repositories make this possible and provide published software versions with unique and persistent identifiers. However, software publication is still a tedious, mostly manual process.To streamline software publication, HERMES, a project funded by the Helmholtz Metadata Collaboration, develops automated workflows to publish research software with rich metadata.The tooling developed by the project utilizes continuous integration solutions to retrieve, collate, and process existing metadata in source repositories, and publish them on publication repositories, including checks against existing metadata requirements. To accompany the tooling and enable researchers to easily reuse it, the project also provides comprehensive documentation and templates for widely used CI solutions. In this paper, we outline the concept for these workflows, and describe how our solution advance the state of the art in research software publication.This work is licensed under 4.0.

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Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software

Dastmalchi

Hao

et al. 2023

Metabolomics

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Practice meets Principle: Tracking Software and Data Citations to Zenodo DOIs

Cited by 4 publications

References 0 publications

ThePySALEcosystem: Philosophy and Implementation

ThePySALEcosystem: Philosophy and Implementation

Software publications with rich metadata: state of the art, automated workflows and HERMES concept

Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software

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