ABSTRACTcDNA clones comprising the entire coding region for human dihydrolipoamide dehydrogenase (dihydrolipoamide:NAD+ oxidoreductase, EC 1.8.1.4) have been isolated from a human liver cDNA library. The cDNA sequence of the largest clone consisted of 2082 base pairs and contained a 1527-base open reading frame that encodes a precursor dihydrolipoamide dehydrogenase of 509 amino acid residues. The first 35-amino acid residues of the open reading frame probably correspond to a typical mitochondrial import leader sequence. The predicted amino acid sequence of the mature protein, starting at the residue number 36 of the open reading frame, is almost identical (>98% homology) with the known partial amino acid sequence of the pig heart dihydrolipoamide dehydrogenase. The cDNA clone also contains a 3' untranslated region of 505 bases with an unusual polyadenylylation signal (TATAAA) and a short poly(A) track. By blothybridization analysis with the cDNA as probe, two mRNAs, 2.2 and 2.4 kilobases in size, have been detected in human tissues and fibroblasts, whereas only one mRNA (2.4 kilobases) was detected in rat tissues.The a-ketoacid dehydrogenase complexes-the pyruvate dehydrogenase multienzyme complex, the a-ketoglutarate dehydrogenase multienzyme complex, and the branchedchain a-ketoacid dehydrogenase multienzyme complexcatalyze the oxidative decarboxylation of pyruvate, aketoglutarate, and the branched-chain a-ketoacids, respectively (1-4). These three complexes occupy key positions in energy metabolism and are involved (i) in connecting glycolysis with the Krebs cycle, (ii) in the Krebs cycle itself, and (iii) in the regulation of the oxidation of branched-chain amino acids, respectively. Each complex consists of at least three catalytic components. The decarboxylase component, which has been designated E1, is specific for each complex, and it most likely represents the rate-limiting step in the overall reaction. The dihydrolipoamide acyltransferase component, designated E2, also substrate specific, is involved in the transfer of the acyl group to CoA. The third component of each complex, dihydrolipoamide dehydrogenase (dihydrolipoamide:NAD+ oxidoreductase, EC 1.8.1.4), designated E3, is considered to be common to all three complexes. E3, a homodimer (subunit Mr = 55,000), contains a noncovalently bound molecule of FAD per subunit and catalyzes the reoxidation of the disulfhydryl form of the lipoyl residue bound to the E2 molecules of the complexes: E3 E2-Lip-(SH)2 + NAD+ <--E2-LiP(S)2 + NADH + H+ Three lines of evidence indicate that the E3 present in these three complexes is identical; they are reconstitution experiments (5), immunological cross-reactivity (6-9), and genetic disorders of E3, which cause simultaneous increases in the blood levels of pyruvate, a-ketoglutarate, and branched-chain ketoacids (10). The glycine cleavage system also contains a dihydrolipoamide dehydrogenase component known as L protein (11). However, this system has not been purified as an intact complex. We have recently suggested th...