10Malaria, a vector borne disease caused by Plasmodium spp., remains a major global cause of 11 morbidity and mortality. Optimization of the disease control strategies requires a thorough 12 understanding of the fundamental processes underlying parasite transmission. Although the 13 number of transmissible stages of Plasmodium (gametocyte) in human blood is frequently 14 used as an indicator of human-to-mosquito transmission potential, this relationship is not 15 always clear. Important efforts have been made to develop molecular tools to fine-tune 16 gametocyte densities estimation and therefore improve the prediction of mosquito infection 17 rates, but a significant level of uncertainty around this estimate remains. Here we show with 18 both human and avian malaria system that the within-vertebrate host distribution of 19 gametocytes could explain much of this uncertainty. By comparing gametocyte densities in 20 bloodstream between different body parts, we found a difference by nearly 50% in humans 21 and by more than 15% in birds. An estimation of gametocyte density from only one blood 22 sample, as is usually the case, could therefore drastically over-or underestimated the 23 infectivity of gametocyte carriers. This might have important consequences on the 24 epidemiology of the disease since we show, using the avian malaria system, that this variation 25 influences the transmission of the parasite to the mosquito vector. In the light of our results, 26 we argue that it is essential to consider the heterogeneous distribution of gametocyte to 27 improve human diagnosis, identify infectious reservoirs and to test new malaria control 28 strategies. 29 30