The basolateral amygdalar complex (BLA) is implicated in behavioral processing ranging from fear acquisition to addiction. Newer methods like optogenetics have enabled the association of circuitspecific functionality to uniquely connected BLA cell types. Thus, a systematic and detailed connectivity profile of BLA projection neurons to inform granular, cell type-specific interrogations is warranted. In this work, we applied computational analysis techniques to the results of our circuittracing experiments to create a foundational, comprehensive, multiscale connectivity atlas of the mouse BLA. The analyses identified three domains within the classically defined anterior BLA (BLAa) that house target-specific projection neurons with distinguishable cell body and dendritic morphologies. Further, we identify brain-wide targets of projection neurons located in the three BLAa domains as well as in the posterior BLA (BLAp), ventral BLA (BLAv), lateral (LA), and posterior basomedial (BMAp) nuclei. Projection neurons that provide input to each nucleus are also identifed. Functional characterization of some projection-defined BLA neurons were demonstrated via optogenetic and recording experiments. Hypotheses relating function to connection-defined BLA cell types are proposed. rACAd, Anterior cingulate cortical area, dorsal part, rostral region cACAd, Anterior cingulate cortical area, dorsal part, caudal region ACAv, Anterior cingulate cortical area, ventral part rACAv, Anterior cingulate cortical area, ventral part, rostral region cACAv, Anterior cingulate cortical area, ventral part, caudal region ACB, Nucleus accumbens AD, Anterodorsal nucleus of the thalamus ADP, Anterodorsal preoptic nucleus of the hypothalamus AHN, Anterior hypothalamic nucleus AI, Agranular insular cortical area AId, Agranular insular cortical area, dorsal part AIv, Agranular insular cortical area, ventral part AIv, Agranular insular cortical area, posterior part AM, Anteromedial nucleus of the thalamus AMd, Anteromedial nucleus of the thalamus, dorsal part AMv, Anteromedial nucleus of the thalamus, ventral part AON, Anterior olfactory nucleus AONm, Anterior olfactory nucleus, medial part AONpv, Anterior olfactory nucleus, posteroventral part ARH, Arcuate hypothalamic nucleus AUD, Auditory cortical area AUDd, Dorsal auditory cortical area AUDp, Primary auditory cortical area AUDv, Ventral auditory cortical area AV, Anteroventral nucleus of the thalamus AVP, Anteroventral preoptic nucleus AVPV, Anteroventral periventricular nucleus bic, Brachium of the inferior colliculus BLA, Basolateral amygdalar complex BLAa, Basolateral amygdalar nucleus, anterior part BLA.am, Basolateral amydalar nucleus, anterior part, medial domain BLA.al, Basolateral amydalar nucleus, anterior part, lateral domain BLA.ac, Basolateral amydalar nucleus, anterior part, caudal domain BLAp, Basolateral amygdalar nucleus, posterior part BLAv, Basolateral amygdalar nucleus, ventral part BMA, Basomedial amygdalar nucleus BMAa, Basomedial amygdalar nucleus, anterior part BMAp, Basomedial...