Bioadsorbents based on biopolymers modified with magnetic nanoparticles stand out for being non-toxic, effective, and easy to recover. Thus, the objective of the present work was to carry out a computer-aided environmental evaluation of the industrial-scale production of bioadsorbents from chitosan modified with iron nanoparticles and functionalized with thiourea as a chelating agent plus mass integration. The plant simulation was carried out in Aspen Plus, and for the mass integration of the process, a pinch analysis was used to determine the minimum target fresh and residual water amount, assuming two process stages: (1) the synthesis of magnetite nanoparticles, and (2) the production of chitosan-based bioadsorbents. The environmental assessment was performed using the waste reduction algorithm (WAR). The potential environmental impact (PEI) was quantified, taking into account the impact of the products and energy, obtaining a value below zero of −0.78 PEI/kg of the product. The photochemical oxidation potential (PCOP) stood out as the category with the greatest impact, mainly related to the use of ethanol during washing. The categories related to toxicological impacts (HTPI, HTPE, TTP, and ATP) had lower values than those related to atmospheric impacts (GWP, ODP, PCOP, and AP). The mass integration of the process resulted in fewer impacts in the HTPE category, as a consequence of the decrease in NaOH in the residual streams and the release of 0.297 PEI/kg of product in the ATP category caused by the presence of Al(OH)₃. It can be concluded that the mass integration managed to reduce up to 51% of the freshwater used in the processes, and it is a useful tool, as it slightly decreased the total potential impacts.