Variability in the genes for toxin A, toxin B and other pathogenicity locus regions is well known and is the basis for the distribution of Clostridium difficile strains into variant toxinotypes. Previous data have indicated that some C. difficile strains have a non-functional truncated form of the binary toxin (CDT) locus. This study analysed variability in the CDT locus and the presence of deleted tcdC genes in C. difficile strains. A total of 146 strains were screened, including known variant toxinotypes and non-variant A + B + (toxinotype 0) and A " B " C. difficile strains. In all of the strains studied, only two forms of the CDT locus were found: a full-length 4.3 kb fragment encoding the functional binary toxin or a truncated 2.3 kb fragment. Whilst the full-length CDT locus was found almost exclusively in variant toxinotypes, the truncated form was detected in 79 % of toxinotype 0 strains. Non-toxinogenic A " B " strains with a truncated version were not found and only rarely possessed the full-length CDT locus (A " B " CDT + strains). Four different forms of the tcdC gene were found; three represented deleted versions and typically were found in toxinotypes III-VII, XI, XIV-XVI and XXIV.
INTRODUCTIONOver the last decade, Clostridium difficile has developed into one of the most important nosocomial pathogens. This Gram-positive, sporulating micro-organism is associated with post-antibiotic intestinal infections, and the prevalence rate and disease severity seem to be rising (McDonald et al., 2006). Additionally, a new highly virulent and multiresistant type (BI/NAP1/027) has emerged recently and is spreading in Canada, the USA, the UK, the Netherlands, Belgium and France (Loo et al., 2005;Pepin et al., 2004;McDonald et al., 2005;Smith, 2005; Joseph et al., 2005;Kuijper et al., 2006;Tachon et al., 2006). In addition to high fluoroquinolone resistance, this epidemic type has some features previously known but uncommon among C. difficile isolates: variant genes for toxins A (TcdA) and B (TcdB), production of the binary toxin (CDT) and deletions in the tcdC gene.Variability in the tcdA and tcdB genes has been well studied and the strains with changed genes have been grouped into toxinotypes (Rupnik et al., 1998). Major changes are defined as deletions and RFLPs in all six PCR fragments covering tcdA and tcdB, whilst minor changes are limited to only one of the PCR fragments (usually the A3 fragment) covering the toxin genes or other pathogenicity locus (PaLoc) regions. To date, 22 toxinotypes have been described and two additional types are reported in this paper. The best-studied and the most widespread are toxinotypes III (including ribotypes 027, 034, 075 and 080) and VIII (including ribotypes 017 and 047) .Binary toxin CDT is detected in some strains in addition to TcdA and TcdB, the primary virulence factors of C. difficile (Popoff et al., 1988;Rupnik et al., 2003a). Binary toxin CDT is composed of two unlinked components, the enzymic (CDTa) and binding (CDTb) components, and acts as an actin-specific AD...