A cross sectional study was conducted during October 2013 to February 2014 to identify and determine the prevalence of Eimeria spp. among broiler chickens reared in open and closed systems in Khartoum, Khartoum North, and Omdurman, Khartoum State, Sudan. A total of 90 broiler intestines were collected from slaughtered broilers at slaughterhouse or farms and examined by direct smear and standard floatation test to detect Eimeria species. The overall prevalence of Eimeria spp. was 5.5 % of the examined samples. Two Eimeria species were identified viz, Eimeria tenella and Eimeria acervulina. E. tenella was the dominant species with an infection rate of 5.5 % followed by E. acervulina 2.2 %. The prevalence of Eimeria spp. in open and closed systems was 4.4 % and 6.7 %, respectively. The overall prevalence of Eimeria spp. was 10 %, 6.7 % and 0 % in Khartoum, Khartoum North and Omdurman, respectively. No significant associations (P ˃ 0.05) were observed between different locations and management systems employed of the examined chickens. Further epidemiological studies should be conducted to determine the prevalence and identify Eimeria spp. in all states of the Sudan.