18Prions are unconventional pathogen without nucleotide genome and their pathogenic properties are defined by the primary 19 structure and the conformation of the constituent abnormal isoform (PrP Sc ) of prion protein (PrP). A polymorphic codon 129 of 20 human PrP that is valine (V129) or methionine (M129) is particularly influential on properties of PrP Sc , affecting transmission 21 efficiencies and clinicopathological features. However, how the single residue is so influential has not been elucidated because 22 the detailed structures of PrP Sc have not been determined yet due to its incompatibility with high-resolution structural analysis. 23 Previously we created an in-register parallel 42 are the influences of polymorphic codon 129 (in human numbering unless otherwise noted) of human PrP, which is either 43 methionine (M129) or valine (V129). Clinicopathological features of sporadic CJD vary depending on the polymorphism, in 44 terms of PrP deposition patterns and lesion profiles in the brain, and apparent molecular sizes of protease-resistant cores of 45 PrP Sc [5]. The PrP Sc from CJD patients homozygous for M129 tend to form diffuse tiny deposits in the brain with 21-kDa 46 protease-resistant core fragment. On the other hand, PrP Sc from CJD heterozygous or homozygous for V129 often forms