We examined the impact of Helicobacter pylori infection on the murine gastric microbiota by culture and terminal-restriction fragment length polymorphism and found that neither acute nor chronic H. pylori infection substantially affected the gastric microbial composition. Interestingly, the total H. pylori burden detected by real-time PCR was significantly higher than that revealed by viable counts, suggesting that the antigenic load sustaining H. pylori-induced gastritis could be considerably higher than previously believed.Helicobacter pylori colonizes the stomachs of an estimated 50% of the world's population and is classified as a group 1 carcinogen (4, 15). Various animal models are currently used to study the pathogenesis of H. pylori infection, but there is little information on the gastric bacterial composition of rodents after H. pylori infection (1, 2, 7, 12). We therefore compared the gastric flora compositions, over time, of uninfected mice and of mice infected with H. pylori using conventional culture methods and terminal-restriction fragment length polymorphism (T-RFLP) analysis.Six-to 8-week-old female C57BL/6 mice were reared under specific-pathogen-free conditions at the animal facility of the Department of Microbiology and Immunology, University of Melbourne. All animal experiments were approved by the University of Melbourne Animal Ethics and Experimental Committee and complied with relevant legislation. Statistical significance was assessed by the nonparametric Mann-Whitney U test, and two-tailed P values of less than 0.05 were considered statistically significant.Preliminary results from culture of stomach homogenates and generation of 16S rRNA gene clone libraries from naïve mice confirmed that the murine stomach was highly colonized by lactobacilli, with the dominant species being Lactobacillus reuteri and Lactobacillus murinus (supplementary data), which is consistent with other studies (1, 2, 10, 12). In addition, T-RFLP data from an initial short-term H. pylori infection experiment with the SS1 strain (6) indicated that the gastric microbiotas of H. pylori-infected mice were similar to those of age-matched naïve mice, implying that an acute H. pylori in-* Corresponding author. Mailing address: