The initial interactions of engineered nanoparticles (NPs) with living cells are governed by physicochemical properties of the NP and the molecular composition and structure of the cell membrane. Eukaryotic cell membranes contain lipid raftsliquid-ordered nanodomains involved in membrane trafficking and molecular signaling. However, the impact of these membrane structures on cellular interactions of NPs remains unclear.Here we investigate the role of membrane domains in the interactions of primary amine-terminated quantum dots (Qdots) with liquid-ordered domains or lipid rafts in model membranes and intact cells, respectively.Using correlative atomic force and fluorescence microscopy, we found that the Qdots preferentially localized to boundaries between liquid-ordered and liquid-disordered phases in supported bilayers. The Qdots also induced holes at these phase boundaries. Using super resolution fluorescence microscopy (STORM), we found that the Qdots preferentially co-localized with lipid rafts in the membrane of intact trout gill epithelial cellsa model cell type for environmental exposures. Our observations uncovered preferential interactions of amineterminated Qdots with liquid-ordered domains and their boundaries, possibly due to membrane curvature at phase boundaries creating energetically favorable sites for NP interactions. The preferential interaction of the Qdots with lipid rafts supports their potential internalization via lipid raft-mediated endocytosis and interactions with raft-resident signaling molecules.The initial interactions of engineered nanoparticles (NPs) at the cell membrane govern NP internalization and impact on cellular functions. These interactions depend on physicochemical properties of the NP and the molecular structure of the cell membrane. Liquid-ordered domains, or lipid rafts, are key structures in eukaryotic cell membranes but their role in NP interactions is unclear. We focus on quantum dots (Qdots)technologically relevant NPs with broad applications and concerns over their environmental release. We show that primary amine-terminated Qdots preferentially interact with liquidordered domain boundaries in bilayers and with lipid rafts in intact cells. These findings shed new light on mechanisms underlying NP-cell interactions and ultimately contribute to predictive evaluations of environmental health and safety for the use of NPs.