PDZ domains play a pivotal role in the synaptic localization of ion channels, receptors, signaling enzymes, and cell adhesion molecules. These domains mediate protein-protein interactions via the recognition of a conserved sequence motif at the extreme C terminus of their target proteins. By means of a yeast two-hybrid screen using the C terminus of the G protein-coupled ␣-latrotoxin receptor CL1 as bait, three PDZ domain proteins of the Shank family were identified. These proteins belong to a single protein family characterized by a common domain organization. The PDZ domain is highly conserved among the family members, significantly different from other known PDZ domains, and specifically binds to the C terminus of CL1. Shank1 and CL1 are expressed primarily in brain, and both proteins co-enrich in the postsynaptic density. Furthermore, Shank1 induces a clustering of CL1 in transfected cells, strongly supporting an interaction of both proteins in vivo.A large class of proteins containing PDZ domains play a general role in the localization of ion channels, signaling molecules, and adhesion molecules to synapses (1-4). These functions are exemplified by the defining family of PDZ domain proteins (PSD-95, Dlg, and ZO-1), known as membrane-associated guanylate kinases (MAGUKs).1 MAGUK proteins include PSD-95/SAP-90 and the closely related PSD-93/chapsyn-110, SAP-97/hdlg, and SAP-102, all of which are found at synapses in brain; the Drosophila PSD-95/SAP-90 homolog, DLG A, which localizes to septate junctions and larval neuromuscular junctions; and ZO-1 and ZO-2, both of which associate with tight junctions between epithelial cells. MAGUKs share a common domain organization, with one or three N-terminal PDZ domains, an SH3 domain, and a C-terminal region homologous to guanylate kinases. PDZ domains mediate protein-protein interactions and typically bind to short amino acid motifs at the