Promicromonospora vindobonensis sp. nov. and Promicromonospora aerolata sp. nov., isolated from the air in the medieval ‘Virgilkapelle’ in Vienna

Busse, Hans‐Jürgen; Zlamala, Christian; Buczolits, Sandra; Lubitz, Werner; Kämpfer, Peter; Takeuchi, Mariko

doi:10.1099/ijs.0.02522-0

Cited by 37 publications

(6 citation statements)

References 22 publications

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“…The genus Promicromonospora Krasil’nikov et al (1961) belongs to the family Promicromonosporaceae in the suborder Micrococcineae (Zhi et al , 2009). This genus is well established in terms of morphological and chemotaxonomic properties (Busse et al , 2003; Jiang et al , 2009) and 16S rRNA gene sequence-based phylogeny (Stackebrandt et al , 1997; Zhi et al , 2009). At the time of writing, the genus comprised nine recognized species, namely Promicromonospora citrea (Krasil’nikov et al , 1961), P. sukumoe (Takahashi et al , 1987), P. aerolata and P. vindobonensis (Busse et al , 2003), P. kroppenstedtii (Alonso-Vega et al , 2008), P. flava (Jiang et al , 2009), P. umidemergens (Martin et al , 2010), P. xylanilytica (Qin et al , 2012) and an endophytic species described by Kaewkla & Franco (2012), P. endophytica .…”

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confidence: 99%

Promicromonospora thailandica sp. nov., isolated from marine sediment

Thawai

Kudo

2012

International Journal of Systematic and Evolutionary Microbiology

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A novel actinomycete, strain S7F-02 T , which produced primary branched hyphae and fragmented into V-and Y-shaped bacillary cells, was isolated from marine sediment collected in the Andaman Sea, Trang Province, Thailand. Lysine was found to be the diagnostic diamino acid in the cell-wall peptidoglycan. The whole-cell sugars of strain S7F-02 T were ribose, arabinose and glucose. The characteristic phospholipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol. The predominant menaquinone was MK-9(H 4 ). The predominant cellular fatty acids were anteiso-C 15 : 0 and iso-C 15 : 0 . The G+C content of the genomic DNA of strain S7F-02 T was 70.6 mol%. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain S7F-02 T should be classified in the genus Promicromonospora. This strain formed a close association with Promicromonospora citrea DSM 43110 T , with which it shared 99.2 % 16S rRNA gene sequence similarity. DNA-DNA hybridization data together with physiological and biochemical properties showed that strain S7F-02 T could be readily distinguished from its closest phylogenetic relatives. On the basis of these phenotypic and genotypic data, strain S7F-02 T is considered to represent a novel species of the genus Promicromonospora, for which the name Promicromonospora thailandica sp. nov. is proposed. The type strain is S7F-02 T (5BCC 41922 T 5JCM 17130 T ).

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Promicromonospora thailandica sp. nov., isolated from marine sediment

Thawai

Kudo

2012

International Journal of Systematic and Evolutionary Microbiology

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“…Most of these species were isolated from soil, the rhizosphere, or the surface of plants. P. vindobonensis and P. aerolata were isolated from indoor air samples (Busse et al, 2003), and P. umidemergens (Martin et al, 2010) was isolated from indoor moisture with mold. Recently, P. alba was isolated from ant cuticles (Guo et al, 2016).…”

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confidence: 99%

Polyphasic insights into the microbiomes of the Takamatsuzuka Tumulus and Kitora Tumulus

Sugiyama¹,

Kiyuna²,

Nishijima³

et al. 2017

J. Gen. Appl. Microbiol.

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Microbial outbreaks and related biodeterioration problems have affected the 1300-year-old multicolor (polychrome) mural paintings of the special historic sites Takamatsuzuka Tumulus (TT) and Kitora Tumulus (KT). Those of TT are designated as a national treasure. The microbiomes of these tumuli, both located in Asuka village, Nara, Japan, are critically reviewed as the central subject of this report. Using culture-dependent methods (conventional isolation and cultivation), we conducted polyphasic studies of the these microbial communities and identified the major microbial colonizers (Fusarium spp., Trichoderma spp., Penicillium spp., dark Acremonium spp., novel Candida yeast spp., Bacillus spp., Ochrobactrum spp., Stenotrophomonas tumulicola, and a few actinobacterial genera) and noteworthy microbial members (Kendrickiella phycomyces, Cephalotrichum verrucisporum (∫ ∫ ∫ ∫ ∫Doratomyces verrucisporus), Sagenomella striatispora, Sagenomella griseoviridis, two novel Cladophialophora spp., Burgoa anomala, one novel species Prototheca tumulicola, five novel Gluconacetobacter spp., three novel Bordetella spp., and one novel genus and species Krasilnikoviella muralis) involved in the biodeterioration of mural paintings, plaster walls, and stone chamber interiors. In addition, we generated microbial community data from TT and KT samples using cultureindependent methods (molecular biological methods, including PCR-DGGE, clone libraries, and pyrosequence analysis). These data are comprehensively presented, in contrast to those derived from culture-dependent methods. Furthermore, the microbial communities detected using both methods are analytically compared, and, as a result, the complementary roles of these methods and approaches are highlighted. In related contexts, knowledge of similar biodeterioration problems affecting other prehistoric cave paintings, mainly at Lascaux in France and Altamira in Spain, are referred to and commented upon. Based on substrate preferences (or ecological grouping) and mapping (plotting detection sites of isolates), we speculate on the possible origins and invasion routes whereby the major microbial colonizers invaded the TT stone chamber interior. Finally, concluding remarks, lessons, and future perspectives based on our microbiological surveys of these ancient tumuli, and similar treasures outside of Japan, are briefly presented. A list of the microbial taxa that have been identified and fully or briefly described by us as known and novel taxa for TT and KT isolates since 2008 is presented in Supplementary Materials. 64SUGIYAMA et al.

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“…The genus Promicromonospora, belonging to the family Promicromonosporaceae, was irst proposed by Krasil'nikov et al (1961). This genus is phylogenetically closely related to the genera Cellulosimicrobium and Oerskovia (Schumann et al 2001;Busse et al 2003). Members of the genus are aerobic and Gram-positive actinomycetes.…”

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confidence: 99%

Draft genome sequence of Promicromonospora panici sp. nov., a novel ionizing-radiation-resistant actinobacterium isolated from roots of the desert plant Panicum turgidum

et al. 2020

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A novel strain of the genus Promicromonospora, designated PT9 T , was recovered from irradiated roots of the xerophyte Panicum turgidum collected from the Ksar Ghilane oasis in southern Tunisia. Strain PT9 T is aerobic, non-spore-forming, Gram-positive actinomycete that produces branched hyphae and forms white to yellowish-white colonies. Chemotaxonomic features, including fatty acids, whole cell sugars and polar lipid profiles, support the assignment of PT9 T to the genus Promicromonospora. The genomic relatedness indexes based on DNA-DNA hybridization and average nucleotide identity values revealed a significant genomic divergence between strain PT9 T and all sequenced type strains of the taxon. Phylogenomic analysis showed that isolate PT9 T was most closely related to Promicromonospora soli CGMCC 4.7398 T . Phenotypic and phylogenomic analyses suggest that isolate PT9 T represents a novel species of the genus Promicromonospora, for which the name Promicromonospora panici sp. nov. is proposed. The type strain is PT9 T (LMG 31103 T = DSM 108613 T ).The isolate PT9 T is an ionizing-radiation-resistant actinobacterium (D 10 value = 2.6 kGy), with resistance to desiccation and hydrogen peroxide. The complete genome sequence of PT9 T consists of 6,582,650 bps with 71.2% G+C content and 6291 proteincoding sequences. This genome will help to decipher the microbial genetic bases for ionizing-radiation resistance mechanisms including the response to oxidative stress.

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Promicromonospora vindobonensis sp. nov. and Promicromonospora aerolata sp. nov., isolated from the air in the medieval ‘Virgilkapelle’ in Vienna

Cited by 37 publications

References 22 publications

Promicromonospora thailandica sp. nov., isolated from marine sediment

Promicromonospora thailandica sp. nov., isolated from marine sediment

Polyphasic insights into the microbiomes of the Takamatsuzuka Tumulus and Kitora Tumulus

Draft genome sequence of Promicromonospora panici sp. nov., a novel ionizing-radiation-resistant actinobacterium isolated from roots of the desert plant Panicum turgidum

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