In vitro rooting response and indole-3-acetic acid (IAA) levels were examined in two genetically related dwarfing apple (Malus pumila Mill) rootstocks. M.26 and M.9 were cultured in vitro using Linsmaier-Skoog medium supplemented with benzyladenine (BA), indole-3-butyric acid (IBA), and 1,3,5-trihydroxybenzoic acid (PG). Rooting response was tested in Lepoivre medium supplemented with IBA and PG. IBA concentrations of 12.0 and 4.0 micromolar induced the maximum rooting percentages for M.9 and M.26, respectively. At these concentrations rooting response was 100% for M.26 and 80% for M.9. Free and conjugated IAA levels were determined in M.26 and M.9 shoots prior to root inducing treatment by high performance liquid chromatography with fluorescence detection and validated by gas chromatography-mass spectrometry using 13[CB]IAA as intemal standard.Basal sections of M.26 shoots contained 2.8 times more free IAA than similar tissue in M.9 (477.1 t 6.5 versus 166.6 l 6.7 nanograms per gram fresh weight), while free IAA levels in apical sections of M.26 and M.9 shoots were comparable (298.0 ± 4.4 versus 263.7 ± 9.3 nanograms per gram fresh weight). Conjugated IAA levels were significantiy higher in M.9 than in M.26 indicating that a greater proportion of total IAA was present as a conjugate in M.9. These data suggest that differences between M.26 and M.9 rooting responses may be related to differences in free IAA levels in the shoot base. mation (3, 5, 6, 9-12, 19, 26). Young leaves and buds generally promote rooting and may be replaced by exogenous auxin (19). Several investigators have reported positive correlations between endogenous IAA levels in cuttings and number of roots produced per cutting (24).In this study, adventitious root formation was examined in two dwarfing apple (Malus pumila Mill) rootstocks. M.26 and M.9 apple rootstocks were selected because they are genetically related, but differ in rooting ability. M.26 is considered easy to root because a high percentage ofstem cuttings produce roots under greenhouse conditions. M.9 is considered difficult to root because shoots require an etiolation treatment after budbreak in order to induce stem cuttings to root (3,8). The difference in adventitious root formation between M.26 and M.9 is also apparent in vitro. Previous research has shown that M.9 requires higher exogenous auxin concentrations than M.26 for root induction (13,14).The differential response of M.26 and M.9 to exogenous auxin applications has led investigators to suggest that differences in rooting ability between M.9 and M.26 result from differences in endogenous auxin levels (16), auxin metabolism (11, 13, 14), or sensitivity of target cells to auxin (10). The objective of this research was to examine the relationship between endogenous IAA levels of M.26 and M.9 shoots cultured in vitro and the rooting response of shoots to exogenous auxins.In vitro clonal propagation of woody species has often been difficult because many species do not readily produce adventitious roots. The most s...