A highly sensitive screening assay based on electrochemical impedance spectroscopy (EIS) has been developed for detecting HIV-1 protease (PR) and subsequent evaluation of its corresponding inhibitors at picomolar levels. The assay format was based on the immobilization of the thiol terminated ferrocene(Fc)-pepstatin conjugate on a singlewalled carbon nanotube/gold nanoparticle (SWCNT/ AuNP) modified gold electrode. The alteration of the interfacial properties of electrodes upon HIV-1 PR and Fc-pepstatin conjugate interaction was traced by EIS. On the basis of the charge transfer resistance data obtained and using a mixed kinetic and diffusion model, this procedure was capable of detecting picomolar HIV-1 PR owing to the specific binding of this enzyme to Fc modified pepstatin. A competitive inhibition assay format was then performed using four potent HIV-1 PR inhibitors. The estimated inhibition constant (K i ) attested that lopinavir/ ritonavir (K i ) 20 ( 3 pM) and saquinavir (K i ) 57 ( 8 pM) even at 10 pM competed strongly with pepstatin for effective binding to HIV-1 PR. Indinavir (K i ) 630 ( 22 pM) only competed well with pepstatin at a much higher concentration (1 nM). No significant inhibitory effect was observed for the fosamprenavir (K i )11 ( 0.5 nM) as expected from this pro-drug. Such results agreed well with the values reported in the literature. This assay format is a definite asset for the expedited development of effective HIV-1 PR inhibitors with low molecular weights.The nucleotide sequence of the HIV-1 genome 1 reveals that the HIV-1 virus encodes an aspartic protease (HIV-1 PR), an essential enzyme for virion assembly and maturation. The enzyme can be inactivated by mutation or chemical inhibition, leading to the production of immature, noninfectious viral particles. 2-4 HIV-1 PR is inhibited by pepstatin, a classical inhibitor for aspartic proteases. 4,5 Since the elucidation of the crystal structures of native HIV-1 PR, 6,7 protease inhibitors have become a new class of medications used to treat or prevent infection by HIV. To date, the U.S. Food and Drug Agency (FDA) has approved several HIV-1 PR inhibitors for HIV/AIDS treatment. Although treatment with these inhibitors in multidrug regiments has significantly reduced viral load as well as mortality, a single amino acid change within HIV-1 PR can render it invisible to an inhibitor. The high mutation rate of HIV-1 PR together with serious side effects such as lipodystrophy, hyperlipidemia, and insulin resistance 8,9 has remained problematic. Hence, the search for new generations of HIV-1 PR inhibitors is essential for prolonged antiviral therapy.Methods for assaying HIV protease have been developed both in vitro and in vivo, such as employing polyprotein or oligopeptide substrates, or the utilization of gel electrophoresis, or high performance liquid chromatography for ascertaining the presence of cleavage products. [10][11][12] Other screening methods involve the coexpression of HIV-1 PR and a biochemical marker, e.g., enhanced green fl...