“…Using an approach combining a cut-off value of E < 10 − 05 , transcript evidence, phylogenetics and functional domain conservation in multigene families, we were able to identify a single protein or a small number (< 8) of related proteins for 21 allergen groups in PRM. A further eleven allergen groups (1, 3, 6, 8, 9, 15, 18, 28, 29, 33, 39, and) had expanded sets of related genes in PRM, which belonged to large multigene families: cysteine and serine proteases, GSTs, chitin binding/chitinase proteins, HSPs, cyclophilins, and structural components alpha tubulin 1A and troponin C. This situation was comparable to the expanded allergen group homologues seen in P. ovis (groups 8, 9, 15, 27, 28, 29 and 33) and E. maynei (groups 1,3,6,9,15,18,27,28,29) [12,73] and is representative of the difficulty in identifying the true orthologous allergen proteins using an in silico approach alone. Identifying the allergen IgE targets of sensitised humans and poultry would be useful in fully comprehending the allergen repertoire of PRM.…”