Fusion proteins comprised of a binding domain and green fluorescent protein (GFP) have the potential to act as one-step binding reagents. In this study, eight single-chain antibodies (scFv) and one single-chain T-cell receptor (scTCR) were secreted as fusions to GFP using a Saccharomyces cerevisiae expression system. Fusion protein secretion levels ranged over 3 orders of magnitude, from 4 g/liter to 4 mg/liter, and correlated well with the secretion levels of the unfused scFv/scTCR. Three fusion types with various linker lengths and fusion orientations were tested for each scFv/scTCR. Although the fusion protein secretion levels were not significantly affected by the nature of the fusion construct, the properties of the fusion protein were clearly influenced. The fluorescence yield per fusion molecule was increased by separating the scFv/scTCR and GFP with an extended (GGGGS) 3 linker, and fusions with scFv/scTCR at the carboxy-terminus were more resistant to degradation. By evaluating leader sequence processing and using GFP fluorescence to track intracellular processing, it was determined that the majority of fusion protein synthesized by the yeast was not secreted and in most cases was accumulating in an immature, although active, endoplasmic-reticulum (ER)-processed form. This contrasted with unfused scFv, which accumulated in both immature ER-processed and mature post-Golgi forms. The results indicated that yeast can be used as an effective host for the secretion of scFv/scTCR-GFP fusion proteins and that as a result of intracellular secretory bottlenecks, there is considerable yeast secretory capacity remaining to be exploited.Antibodies are widely used for cell immunostaining, flow cytometry, and cellular localization studies. Although many applications make use of a fluorescently labeled secondary antibody for detection purposes, direct conjugation of antibodies with organic fluorophores can also be used for visualization and quantification. Often, the conjugation of the antibody and fluorophore is performed using primary amine-coupling chemistry that results in the attachment of the fluorophore to lysine residues. However, lysine is frequently found within the antigen binding region, and fluorophore coupling can diminish or completely inhibit antigen binding activity (13,26). In addition, the environmental sensitivities of organic dyes and their susceptibilities to photobleaching are quite variable. Direct fusion of an antibody to green fluorescent protein (GFP) could overcome these disadvantages. Such a one-step immunoreagent would benefit from the fact that GFP is quite stable over a wide range of pH, temperature, and detergent conditions and is resistant to photobleaching (23). In terms of the antibody subunit of a GFP fusion protein, single-chain antibodies (scFvs) consisting of the variable heavy-and light-chain regions of intact antibodies retain binding activity and can be efficiently processed by microbial production hosts. In addition, scFvs are typically used for antibody selection and engine...