Protein phosphorylation is central to the understanding of multiple cellular signaling pathways responsible for regulating the self-renewal and differentiation of neural stem cells (NSCs). Here we performed a large-scale phosphoproteomic analysis of rat fetal NSCs using strong cation exchange chromatography prefractionation and citric acid-assisted two-step enrichment with TiO 2 strategy followed by nanoLC-MS/MS analysis. Totally we identified 32,546 phosphosites on 5,091 phosphoproteins, among which 23,945 were class I phosphosites, and quantified 16,000 sites during NSC differentiation. More than 65% of class I phosphosites were novel when compared with PhosphoSitePlus database. Quantification results showed that the early and late stage of NSC differentiation differ greatly. We mapped 69 changed phosphosites on 20 proteins involved in Wnt signaling pathway, including S552 on catenin beta-1 (Ctnnb1) and S9 on glycogen synthase kinase 3b (Gsk3b). Western blotting and real-time PCR results proved that Wnt signaling pathway plays critical roles in NSC fate determination. Furthermore, inhibition and activation of PKA dramatically affected the phosphorylation state of Ctnnb1 and Gsk3b, which regulates the differentiation of NSCs. Our data provides a valuable resource for studying the self-renewal and differentiation of NSCs. STEM CELLS 2016;34:2090-2101
SIGNIFICANCE STATEMENTAlthough the self-renewal and differentiation of neural stem cells are very important to the development and impairment of nervous system, the underlying mechanism is still unclear. Here we report the largest comprehensive phosphoproteome of primarily cultured rat neural stem cells and quantified them during differentiation. Many phosphorylation sites on key proteins of some signaling pathways were quantified, including catenin b-1 and glycogen synthase kinase 3b. Finally we proved that PKA regulates neural stem cell differentiation through phosphorylation of catenin b-1 and glycogen synthase kinase 3b. We expect that our data will provide a valuable resource to help understand the mechanism of NSC differentiation more comprehensively.