In earlier studies we have identified FKBP20-2 and CYP38 as soluble proteins of the chloroplast thylakoid lumen that are required for the formation of photosystem II supercomplexes (PSII SCs). Subsequent work has identified another potential candidate functional in SC formation (PSB27). We have followed up on this possibility and isolated mutants defective in the PSB27 gene. In addition to lack of PSII SCs, mutant plants were severely stunted when cultivated with light of variable intensity. The stunted growth was associated with lower PSII efficiency and defective starch accumulation. In response to high light exposure, the mutant plants also displayed enhanced ROS production, leading to decreased biosynthesis of anthocyanin. Unexpectedly, we detected a second defect in the mutant, namely in CP26, an antenna protein known to be required for the formation of PSII SCs that has been linked to state transitions. Lack of PSII SCs was found to be independent of PSB27, but was due to a mutation in the previously described cp26 gene that we found had no effect on light adaptation. The present results suggest that PSII SCs, despite being required for state transitions, are not associated with acclimation to changing light intensity. Our results are consistent with the conclusion that PSB27 plays an essential role in enabling plants to adapt to fluctuating light intensity through a mechanism distinct from photosystem II supercomplexes and state transitions.photosystem | PSII supercomplex | photosynthesis | anthocyanin biosynthesis | reactive oxygen species P hotosynthetic light reactions entail the coordinated function of several large membrane complexes: photosystem I (PSI), photosystem II (PSII), cytochrome b6f complex, and CF 0 -CF 1 complex. PSII catalyzes the initial step of photosynthesis, the light-dependent oxidation of water that yields molecular oxygen and reduced plastoquinone. The native form of PSII residing in the thylakoid membrane is believed to be organized into several types of supercomplexes (SCs), including the PSII core and the peripheral light harvesting complex II (LHCII), that play a primary role in the harvesting of light, transfer of excitation energy to the reaction center and regulation of light utilization. Several monomeric antenna proteins including CP24, CP26, and CP29 regulate the interaction of the PSII core with LHCII trimers (1-4). Regulation is achieved through photoprotective mechanisms that dissipate absorbed excess energy as heat in response to stress conditions such as high light intensity (5, 6).In natural settings, both the intensity and the spectral quality of light vary extensively, sometimes within very short periods. The changes in light intensity result in imbalanced excitation of PSI and PSII, and with that may lower the efficiency of the photosynthetic light reactions. In acclimating to the changing conditions, plants modify their thylakoid proteins and reorganize their photosynthetic machinery (7,8). In a rapid response, designated state transitions (9), LHCII associates...