Membrane fusion is essential in a myriad of eukaryotic cell biological processes, including the synaptic transmission. Rabphilin-3A is a membrane trafficking protein involved in the calcium-dependent regulation of secretory vesicle exocytosis in neurons and neuroendocrine cells, but the underlying mechanism remains poorly understood. Here, we report the crystal structures and biochemical analyses of Rabphilin-3A C2B-SNAP25 and C2B-phosphatidylinositol 4,5-bisphosphate (PIP 2 ) complexes, revealing how Rabphilin-3A C2 domains operate in cooperation with PIP 2 /Ca 2+ and SNAP25 to bind the plasma membrane, adopting a conformation compatible to interact with the complete SNARE complex. Comparisons with the synaptotagmin1-SNARE show that both proteins contact the same SNAP25 surface, but Rabphilin-3A uses a unique structural element. Data obtained here suggest a model to explain the Ca 2+ -dependent fusion process by membrane bending with a myriad of variations depending on the properties of the C2 domain-bearing protein, shedding light to understand the fine-tuning control of the different vesicle fusion events.C2 domains | membrane fusion | Rabphilin-3A | SNAP-25 | X-ray crystallography N eurons are able to communicate with others through the liberation of neurotransmitters during synapses. Numerous proteins are recruited to the presynaptic space to execute a highly controlled and precise mechanism, resulting in the liberation of neurotransmitters to the synaptic cleft. Central components of the process are the soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) proteins: syntaxin-1A (STX1A), VAMP2 (synaptobrevin-2), and synaptosome-associated protein of 25 kDa (SNAP25), which fold into a stable four-helix bundle that brings together vesicle and plasma membranes, driving membrane fusion (1-4). Other important players are complexin, Munc18-1, Munc13, and a collection of proteins that share a common structural motif: the C2 domain (5, 6). These domains are regulated by their ability to bind Ca 2+ , phospholipids, and protein interactions, endowing them with properties to fine-tune the wide variety of vesicle release modes (7). Nowadays, we have detailed information on many of the steps contributing to docking, priming, and fusion of these vesicles, but a clear picture on how these regulators contribute in each particular state still remains under debate, mainly due to the lack of high-resolution structural data.Rabphilin-3A (Rph3A) is a membrane trafficking protein involved in the Ca 2+ -dependent regulation of secretory vesicle exocytosis in neurons and neuroendocrine cells; however, its exact role in the process still remains under debate. The protein is targeted to synaptic or secretory vesicles through the interaction with the small G-proteins Rab3 or Rab27, via its N-terminal Rabbinding domain (8-10). Its C-terminal domain consists of tandem C2 domains that are responsible for the Ca 2+ -and phospholipidsdependent membrane specificity of the protein (11, 12) and also participate in oth...