Despite high rates of loss of heterozygosity affecting various chromosomes, the number of tumor suppressor genes (TSGs) found to be consistently involved in primary liver cancer is low. In the past decade, characterization of homozygous deletions (HDs) in tumors has become instrumental to identify new TSGs or to reveal the influence of a particular TSG on the development of a specific tumor type. We performed a detailed HD profiling at 238 critical loci on a collection of 57 hepatobiliary tumor cell lines (hepatocellular, cholangiocellular, and bile duct carcinomas, hepatoblastomas, and immortalized hepatocytes). We identified HDs at 9 independent loci, the analysis of which was extended to 17 additional hepatobiliary tumor cell lines. In total, 34 homozygous losses involving 9 distinct genes were detected in the 74 cell lines analyzed. Besides expected deletions at the p16-INK4A/p14-ARF, FHIT, AXIN1, and p53 genes, we detected HDs at the PTEN, NF2, STK11, BAX, and LRPDIT genes that were formerly not known to be implicated in human liver tumorigenesis. In conclusion, our data suggest that these genes may represent novel liver tumor suppressive targets. Additional tumorigenic pathways should be carefully considered in hepatocarcinogenesis. ( H epatocellular carcinoma (HCC), the main histologic form of primary liver cancer, is one of the most prevalent human tumors in the world. 1,2 Chronic infections of the liver by hepatitis B or hepatitis C viruses represent the dominant etiologies of HCC. 3 The historically recent spread of hepatitis C virus in human populations will result in a substantial increase in HCC incidence in developed countries and several epidemiologic surveys already have detected such a trend for the past 20 years in Japan, the United States, and Europe. 4,5 Until recently, chromosomal abnormalities occurring in HCC were defined poorly. We and others have performed allelotyping and comparative genomic hybridization studies to characterize the main chromosome targets in human liver tumorigenesis. 6-8 Only a handful of cancer genes are, however, consistently found mutated in this tumor type. p53 and AXIN1 genes are inactivated by somatic mutations in, respectively, 30% and 5% of cases, whereas p16-INK4A and SOCS1 are silenced through promoter hypermethylation in more than 50% of cases. 9-13 Finally, -catenin, the only proto-oncogene previously found to be mutated in liver cancer, is activated in 20% of the samples. 14 The liver tumor-suppressive function of the product of the mannose-6-phosphate/insulinlike growth factor 2 receptor (IGF2/M6PR) gene is suspected but remains still controversial. 15,16 The past decade has seen the isolation of numerous tumor suppressor genes (TSGs) through the characterization of homozygous deletions (HDs) in primary tumors and cell lines. Although, HDs represent rare events, many of the TSG isolations, including WT1, p16-INK4A, BRCA2, FHIT, PTEN, SMAD4, and SNF5, were at least partly attributable to their detection. [17][18][19][20][21][22] In an attempt to