The aminophenol (AP) catabolic operon in Pseudomonas putida HS12 mineralizing nitrobenzene was found to contain all the enzymes responsible for the conversion of AP to pyruvate and acetyl coenzyme A via extradiol meta cleavage of 2-aminophenol. The sequence and functional analyses of the corresponding genes of the operon revealed that the AP catabolic operon consists of one regulatory gene, nbzR, and the following nine structural genes, nbzJCaCbDGFEIH, which encode catabolic enzymes. The NbzR protein, which is divergently transcribed with respect to the structural genes, possesses a leucine zipper motif and a MarR homologous domain. It was also found that NbzR functions as a repressor for the AP catabolic operon through binding to the promoter region of the gene cluster in its dimeric form. A comparative study of the AP catabolic operon with other meta cleavage operons led us to suggest that the regulatory unit (nbzR) was derived from the MarR family and that the structural unit (nbzJCaCbDGFEIH) has evolved from the ancestral meta cleavage gene cluster. It is also proposed that these two functional units assembled through a modular type gene transfer and then have evolved divergently to acquire specialized substrate specificities (NbzCaCb and NbzD) and catalytic function (NbzE), resulting in the creation of the AP catabolic operon. The evolutionary process of the AP operon suggests how bacteria have efficiently acquired genetic diversity and expanded their metabolic capabilities by modular type gene transfer.Nitroaromatic compounds are widely used in the manufacture of dyes, drugs, explosives, and solvents, and massive amounts of their discharge have had detrimental effects on the environment. Much attention has been paid to the bioremediation of these compounds, and both aerobic and anaerobic degradation by microorganisms have been reported (13,16,45). As a typical recalcitrant nitroaromatic compound, nitrobenzene (NB) is known to be metabolized by aerobic bacteria through either an oxidative pathway (35) or a partial reductive pathway (20,22,34,38). In the partial reductive pathway, NB is converted into 2-aminophenol (AP), which is subsequently metabolized via a meta-like cleavage pathway. Several enzymes involved in NB catabolism of Pseudomonas pseudoalcaligenes JS45 were purified and characterized (21,23,24,31,44). However, despite intensive studies on the catabolic pathway of NB and characterization of the relevant enzymes, a detailed molecular basis of and a regulatory mechanism for NB catabolism remain yet to be elucidated. Recently, we reported the novel genetic organization of the NB catabolic gene clusters that are on the catabolic plasmids pNB1 and pNB2 in Pseudomonas putida HS12 (37). All the genes except for that of mutase, which was found on pNB2, were clustered on pNB1. Of the nbz (for nitrobenzene degradation) genes, the AP gene cluster was revealed to be a tightly regulated one.It has been generally accepted that horizontal gene transfer (HGT) has played an integral role in the dissemination of ...