The present study investigates the impact of environmental factors on the occurrence of morphotypes in Artemia franciscana (Article 4; ICZN, 2000) encountered from different salterns of Tamilnadu, southeast coast India. Samplings of brine shrimp were done at four different sites (Kelambakkam, Vedaranyam, Tuticorin and Nagarcoil) on a seasonal basis from December, 2014 to August, 2016. Variations of physicochemical factors (temperature, pH, salinity, DO, nitrate, nitrite, ammonia, phosphate and silicate) were recorded in water samples at all the sampling sites. Intensive survey indicated the occurrence of morphotypes M1, M3, M4 in males and F1, F2, F3 in females from all sampling sites. Principal component analysis, Pearson's correlation and regression analysis indicated that all physicochemical factors are not significantly correlated with the occurrence of morphotypes. From these studies, it is evident that morphotypes are not seemed to be influenced by physicochemical factors prevailing at the salterns. However, the variation in water temperature seems to influence the abundance of morphotypes M1 and M4 in males and F1 and F2 in females from all the sampling sites, which was further confirmed by cluster analysis.