There is an urgent need to design new anticancer agents that can prevent cancer cell proliferation even with minimal side effects. Accordingly, two new series of 3-methylquinoxalin-2(1
H
)-one and 3-methylquinoxaline-2-thiol derivatives were designed to act as VEGFR-2 inhibitors. The designed derivatives were synthesised and evaluated
in vitro
as cytotoxic agents against two human cancer cell lines namely, HepG-2 and MCF-7. Also, the synthesised derivatives were assessed for their VEGFR-2inhibitory effect. The most promising member
11e
were further investigated to reach a valuable insight about its apoptotic effect through cell cycle and apoptosis analyses. Moreover, deep investigations were carried out for compound
11e
using western-plot analyses to detect its effect against some apoptotic and apoptotic parameters including caspase-9, caspase-3, BAX, and Bcl-2. Many
in silico
investigations including docking, ADMET, toxicity studies were performed to predict binding affinity, pharmacokinetic, drug likeness, and toxicity of the synthesised compounds. The results revealed that compounds
11e, 11g, 12e, 12g,
and
12k
exhibited promising cytotoxic activities (IC
50
range is 2.1 − 9.8 µM), comparing to sorafenib (IC
50
= 3.4 and 2.2 µM against MCF-7 and HepG2, respectively). Moreover,
11b, 11f, 11g, 12e, 12f, 12g,
and
12k
showed the highest VEGFR-2 inhibitory activities (IC
50
range is 2.9 − 5.4 µM), comparing to sorafenib (IC
50
= 3.07 nM). Additionally, compound
11e
had good potential to arrest the HepG2 cell growth at G2/M phase and to induce apoptosis by 49.14% compared to the control cells (9.71%). As well, such compound showed a significant increase in the level of caspase-3 (2.34-fold), caspase-9 (2.34-fold), and BAX (3.14-fold), and a significant decrease in Bcl-2 level (3.13-fold). For
in silico
studies, the synthesised compounds showed binding mode similar to that of the reference compound (sorafenib).