2012
DOI: 10.1074/mcp.m112.022079
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Quantitative Proteomic Analysis Reveals that Antioxidation Mechanisms Contribute to Cold Tolerance in Plantain (Musa paradisiaca L.; ABB Group) Seedlings

Abstract: Banana and its close relative, plantain are globally important crops and there is considerable interest in optimizing their cultivation. Plantain has superior cold tolerance compared with banana and a thorough understanding of the molecular mechanisms and responses of plantain to cold stress has great potential value for developing cold tolerant banana cultivars. In this study, we used iTRAQbased comparative proteomic analysis to investigate the temporal responses of plantain to cold stress. Plantain seedlings… Show more

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Cited by 105 publications
(97 citation statements)
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“…Activation time for HCD analysis was 0.1 min. All data were acquired using XCalibur 2.1 (Thermo-Fisher Scientific) [18,24]. Proteins were identified using the MS data to query the switchgrass annotated database () via Mascot v2.3.02 (Matrix Sciences, Boston, MA, USA).…”
Section: Methodsmentioning
confidence: 99%
“…Activation time for HCD analysis was 0.1 min. All data were acquired using XCalibur 2.1 (Thermo-Fisher Scientific) [18,24]. Proteins were identified using the MS data to query the switchgrass annotated database () via Mascot v2.3.02 (Matrix Sciences, Boston, MA, USA).…”
Section: Methodsmentioning
confidence: 99%
“…In order to determine the criteria for significant differential expression, data from two replicate runs (Set 1 and Set 2) of the same biological replicate were analyzed. 48 The log 2 -transformed fold-change ratios between Set 1 and Set 2 in 116/114 and 117/115 followed a normal distribution, respectively. The cutoff values were defined as the log 2 transformed data at which 95% of all target proteins did not deviate from each other ( Figure S2 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 were further classified by WEGO 49 and assigned to several level 2 BP terms.…”
Section: Mass Spectrometry Data Analysismentioning
confidence: 99%
“…Nano LC-MS/MS analysis was performed using an Orbitrap Velos Pro™ Hybrid Ion Trap Orbitrap Mass Spectrometer (Thermo Fisher Scientific, USA). Differences in protein expression profiles were identified by searching the NCBInr database (http://www.ncbi.nlm.nih.gov/protein) for Bos taurus using Mascot Daemon software (version 2.3.02, Matrix Science, USA) (6,28).…”
Section: Methodsmentioning
confidence: 99%