Coastal ocean primary productivity is often limited by nitrogen (N) availability, which is determined by the balance between N sources (e.g., N-fixation, groundwater, river inputs, etc.) and sinks (e.g., denitrification, sediment burial, etc.). Historically, heterotrophic N-fixation in sediments was excluded as a significant source of N in estuarine budgets, based on low, indirectly measured rates (e.g., acetylene reduction assay) and because it was unnecessary to achieve mass balance. Many recent studies using net N 2 flux measurements have shown that sediment N-fixation can equal or exceed N 2 loss. In an effort to quantify N 2 production and consumption simultaneously, we measured N-fixation and denitrification directly in sediment cores from a temperate estuary (Waquoit Bay, MA). N-fixation, dissimilatory nitrate reduction to ammonium, and denitrification occurred simultaneously, and the net N 2 flux shifted from uptake (N-fixation) to efflux (denitrification) over the 120-h incubation. Evidence for Nfixation included net 28 N 2 and 30 N 2 uptake, 15 NH 4 + production from 30 N 2 additions, 15 N organic matter production, and nifH expression. N-fixation from 30 N 2 was up to eight times higher than potential denitrification. However, N-fixation calculated from 15 NO 3 − was one half of the measured fixation from 30 N 2 , indicating that 15 NO 3 -isotope labeling calculations may underestimate N-fixation. These results highlight the dynamic nature of sediment N cycling and suggest that quantifying individual processes allows a greater understanding of what net N 2 fluxes signify and how that balance varies over time.