The dynamics of two domains in the myoglobin molecule, close to the heme and inside the protein medium including the surface, are investigated through the study of the fluorescence oxygen quenchng of two probes imbedded in the heme pocket: zinc protoporphyrin IX (with a fluorescence lifetime of 2.1 ns) and metal-free protoporphyrin IX (with a fluorescence lifetime of 17.8 ns).The dynamic aspect of proteins has been well established in the last few years. Fluorescence quenching methodologies have been particularly important in t h s area (see [l] for a review). A detailed multifrequency phase and modulation study of the diffusion of oxygen in protoporphyrin IX adducts of hemoglobin and myoglobin has been published [2]. The data were analyzed in terms of a model which takes into account the rate of acquisition of quencher by the protein, the diffusional rate of quencher in the protein interior and the rate of exit of quencher from the protein [3]. However, in those studies the calculated rate of migration of quencher through the protein interior assumed isotropic diffusion and hence represented an average value. To address the question of anisotropic diffusion in the protein interior, i. e. varying diffusion rates in different protein domains, we have prepared the zinc protoporphyrin IX adduct of myoglobin. The rationale for this approach is that the shorter fluorescence lifetime of the zinc adduct (w 2 ns) compared to the metalfree adduct ( % 18 ns) would allow us to probe a region closer to the heme pocket. We report here for the first time results of oxygen quenching experiments on horse heart myoglobin labelled with these two probes.
MATERIALS AND METHODS
PreparationsHorse heart myoglobin was purchased from Sigma. The porphyrins were obtained from Porphyrin Products Inc. MbdesFe (myoglobin without iron) and MbFe + Zn (myoglobin in which the heme iron has been replaced by a zinc atom) were prepared by the procedure described previously for MbdesFe [2]. Incorporation of the porphyrins in the heme pocket of myoglobin was controlled by comparing the MbdesFe and absorption and emission spectra to those of porphyrins dissolved in different solvents (Tables 1 and 2). The quality and the homogeneity of the globin-porphyrins were confirmed by the homogeneous fluorescence lifetime of the first emission peak of the incorporated porphyrin in the All experiments were carried out in aqueous solvent at pH 7 with protein concentration near 3 pM for both proteins. Concentrations were determined spectrophotometrically using absorption coefficients of 122 mM-' cm-' at 427 nm for MbFe + Zn [5] and of 12.6 mM-' cm-I at 506 nm for t61. MbdesFe
Absorbance and fluorescence spectraAbsorbance data were obtained with a Perkin-Elmer Lambda 5 UV/VIS spectrophotometer using 1 -cm-pathlength cuvettes. Technical fluorescence spectra were obtained with a Perkin-Elmer LS-5 spectrofluorometer. The bandwidths used for excitation and emission were 10 nm. Optical pathlengths of 1 cm and 0.4 cm were used for the mission and excitation wavelengths...