Cheilantho ids are the most commonl y e ncountered fe rn species of the arid southwest and other xeric habitats throughout the world. Cheilanthes, Notholaena, Pellaea, and Bommeria are the best known southwestern genera, but some authors recogni ze segregate genera such as Argyrochosma, Aspidotis, Astrolepis, and Pentag ramma. Others reject di stinctions among some of these genera as artificial, leaving cheil antho id generic concepts in a state of flu x. This unsettl ed taxonomy is often attributed to morpholog ical homoplasy associated with adaptation to xeric habitats , suggesting the need for new analyses that do not depend o n potentially mi sleading morphology. Nucleotide sequences of the maternally inherited, chloroplast-encoded rbcL gene from 57 species that bear on the relationships of the cheilanthoids of the southwest were c1adistically analyzed under the optimality criterion of max imum parsimony. The results provide new insights into phylogeneti c re lationships and ge neric circumscriptio ns of these ferns. Mexican Llavea cordifolia is rejected from the cheilantho ids, traditio nal Cheilanthes, Notholaena, and Pellaea are polyphyletic, and the segregati ons of A rgyrochosma, Aspidotis, Astrolepis, and Pentag ramma are supported. To assess confidence in these conclusions, results of the rbcL-based analys is are compared with those based on ITS sequences of biparentall y inherited nucl ear ribosomal DNA (nrDNA) for a subset of cheil anthoid taxa. These two data sets yield remarkabl y congruent topologies at shall owe r phylogenetic levels, suggesting that previous taxonomic proble ms in thi s g roup may indeed be attributable to diffi culties in inte rpreting the taxonomic significance of morphological characters . Disagreement at deeper levels of the topologies suggests the need to incorporate data from less rapidly evolving nrDNA regions.