Boron nitride nanotubes (BNNTs) are analogous nanostructures to carbon nanotubes (CNTs), possessing similar properties such as Young's modulus and thermal conductivity, but superior resistance to oxidation and thermal stability. In addition, BNNTs are insulating materials, whereas CNTs are electrically conductive. They could be used as reinforcements in polymeric matrices as heat dissipators or as protective coatings in harsh environments. However, when incorporating them into polymers, one main drawback is their tendency to agglomerate. To improve their dispersion, covalent surface modification can be applied, with solvent-free approaches being preferred. Herein, we used syngas photo-initiated chemical vapour deposition (PICVD) to incorporate oxygen functionalities on the surface of BNNT. X-ray photoelectron spectroscopy analysis showed a highly oxidized BNNT surface after treatment. In addition, a decrease in water contact angle and an increase in surface energy were observed for the treated material. These results open new possibilities to incorporate hydrophilic BNNTs surfaces into polar polymers or other matrices of interest.