5-Taurinomethyluridine (τm 5 U) and 5-taurinomethyl-2-thiouridine (τm 5 s 2 U) are located at the wobble position of human mitochondrial (hmt) tRNA Leu(UUR) and tRNA Lys , respectively. Both hypermodified units restrict decoding of the third codon letter to A and G. Pathogenic mutations in the genes encoding hmt-tRNA Leu(UUR) and hmt-tRNA Lys are responsible for the loss of the discussed modifications and, as a consequence, for the occurrence of severe mitochondrial dysfunctions (MELAS, MERRF). Synthetic oligoribonucleotides bearing modified nucleosides are a versatile tool for studying mechanisms of genetic message translation and accompanying pathologies at nucleoside resolution. In this paper, we present site-specific chemical incorporation of τm 5 U and τm 5 s 2 U into 17-mers related to the sequence of the anticodon arms hmt-tRNA Leu(UUR) and hmttRNA Lys , respectively employing phosphoramidite chemistry on CPG support. Selected protecting groups for the sulfonic acid (4-(tert-butyldiphenylsilanyloxy)-2,2-dimethylbutyl) and the exoamine function (-C(O)CF 3 ) are compatible with the blockage of the canonical monomeric units. The synthesis of τm 5 s 2 U-modified RNA fragment was performed under conditions eliminating the formation of side products of 2-thiocarbonyl group oxidation and/or oxidative desulphurization. The structure of the final oligomers was confirmed by mass spectroscopy and enzymatic cleavage data.