D-Psicose, as a low-calorie rare sugar, has attracted a lot of attention in recent years for alternating to sucrose. The anti-obesity effect of D-Psicose has been extensively confirmed in previous studies, however, the impact of D-Psicose on colitis remains vague. Here, we firstly evaluated the effect of 21 days of D-Psicose prophylactic intervention on DSS-induced colitis in C57BL/6 mice. The pathological symptoms, inflammatory cytokines levels, gut microbiota composition, short chain fatty acids production and colonic barrier integrity were comprehensively evaluated. The results confirmed that D-Psicose intervention aggravated colitis, characterized by the exacerbation of colon shortening, increase of colonic inflammatory infiltration, and marked exaltation of disease activity indices and IL-6, IL-1β and TNF-α levels. Further, the dysfunction of gut microbiota was identified in the Psicose group. The abundance of pro-inflammatory bacteria Lachnospiraceae_NK4A136_group was significantly up-regulated while the abundance of probiotics Akkermansia and Lactobacillus were significantly down-regulated in the Psicose group compared to the Model group. Moreover, the production of short chain fatty acids was suppressed in the Psicose group, accompanied by a decrease in the level of Muc-2. Collectively, the underlying mechanism of the exacerbation of colitis by D-Psicose intervention might be attributed to microbiota dysfunction accompanied by the reduction of short chain fatty acids, which leads to the damage of the mucosal barrier and the intensification of inflammatory invasion.