Previous studies have shown that butyrate is an important energy source for the distal colon, and that its metabolism may be defective in . ulcerative colitis (UC). A (Gut 1993; 34: 1552-1558 of the colonic epithelium. Colitis, which is histologically similar to ulcerative colitis, has also been described in association with pellagra.5 How the various forms of nutritional colitis relate to ulcerative colitis (UC) is uncertain, but studies have suggested that metabolism of the short chain fatty acid butyrate is impaired in UC.i In these studies, in common with many others, it has not been possible to discover if the change was a primary defect or merely a secondary effect of the disease process.The frequency of 'pouchitis' in ulcerative colitis patients who have colectomy and pouch construction contrasts with the apparent rarity of pouchitis in patients who have the same operation for familial polyposis. '°This implies a potential abnormality of the ileal mucosa in ulcerative colitis that is not evident when the ileum and colon are in normal continuity, with the possible exception of 'backwash ileitis'. In view of this it seems appropriate to study mucosal metabolism in ileal as well as colonic mucosa in UC patients and controls in the expectation that any abnormalities that could be detected in the histologically normal ileum of ulcerative colitis patients would be unlikely to be secondary phenomena.A further problem with the interpretation of some previous studies of mucosal metabolism67 has been concern that the procedure used for isolating a pure epithelial cell population from resected bowel specimens may itself have introduced artefacts, and that these artefactual changes might well have been different in the inflamed colitic tissue from those in the histologically normal colon.This paper describes a technique that allows metabolism of nutrients to be assessed in whole epithelial biopsy specimens, and this technique has been used to assess the metabolism of butyrate and glutamine by ileal and colonic biopsy specimens from patients with idiopathic ulcerative colitis and controls.