Hepatocyte nuclear factor 4␣ (HNF-4␣), a liver-specific transcription factor, plays a significant role in many liver-specific functions, including lipid, glucose, drug, and ammonia metabolism, and also in embryonal liver development. However, its functions and regulation are not yet clearly understood. In this study, we constructed an adenovirus vector carrying rat HNF-4␣ cDNA and transfected the adenovirus to human hepatoma cells, HuH-7, to enforce expression of the exogenous HNF-4␣ gene. We analyzed HNF-4␣-induced genes using cDNA microarray technology, which included over 9000 genes. As a result, 62 genes showed a greater than 2.0-fold change in expression level after the viral transfection. Fifty-six genes were consistently induced by HNF-4␣ overexpression, and six genes were repressed. To assess HNF-4␣ function, we attempted to classify the genes, which had been classified by their encoding protein functions in a previous report. We could classify 45 genes. The rest of the HNF-4␣-sensitive genes were unclassified (4 genes) or not identified (13 genes). Among the classified genes, almost half of the induced genes (26 of 40) were related to metabolism genes and particularly to lipid metabolism-related genes. This cDNA microarray analysis showed that HNF-4␣ is one of the central liver metabolism regulators.Differentiation of mammalian cells is associated with changes in gene expression that are primarily controlled at the level of transcription. Tissue-specific gene transcription is regulated based on the recognition of cis-elements of the target genes, accomplished by transcription factors that have restricted tissue distributions. Transcription factors that control embryonic cell differentiation are often required to maintain and regulate gene expression in the adult cell. Liver-specific gene expression is governed by the combinatorial action of a small set of liver-enriched transcription factors as follows: hepatocyte nuclear factor-1 (HNF-1), 1 a member of the POU homeobox gene family (1); the leucine zipper dimerization family, including CCAAT/enhancer-binding protein (C/EBP) ␣ (2); Dsite-binding protein (3); and C/EBP/liver activator protein (4); HNF-4, a member of the steroid hormone receptor superfamily (5); and HNF-3, the DNA binding domain, which is very similar to that of the Drosophila homeotic forkhead gene (6). Although many of these factors have been shown to be important components of the differentiation process that culminates in the fully functional liver, the manner in which different members of these families participate in the determination of cell phenotypes is poorly understood. Dedifferentiated hepatoma variants (7) and intertypic rat hepatoma-human fibroblast hybrids that show extinction of liver-specific gene expression (8) are deficient for the expression only of HNF-4 and HNF-1, and re-expression of liverspecific genes in revertants correlates with the re-expression of both liver-enriched transcriptional factors. We have demonstrated that when hepatocytes are plated onto a model ba...