The TR4 orphan receptor is a member of the nuclear receptor superfamily that modulates gene expression via binding to the AGGTCA direct repeat hormone response element. Here we report a functional study of TR4 interaction with the core promoter of the hepatitis B virus (HBV). The electrophoretic mobility shift assay shows that TR4 can bind to the direct repeat 1 sequence element (AGGTTAAAGGTCT, nucleotide coordinates 1757-1769, TR4RE-HBV) on the HBV core promoter. TR4 also can enhance the activity of a synthetic luciferase reporter linked with four copies of TR4RE-HBV in either liver HepG2 or non-liver H1299 cells in a dose-dependent manner. Surprisingly, TR4 represses the activity of a luciferase reporter containing the entire HBV genome sequences. Moreover, mutation of this TR4RE-HBV site in the HBV core promoter diminishes the TR4 suppression effect. This TR4-induced suppression of HBV core promoter activity is further confirmed by primer extension analysis of the HBV core RNAs, showing that TR4 represses both pre-core and core mRNAs. Further dissection of this repressive mechanism indicates that TR4 may suppress the HBV core promoter activity via repressing HNF4␣-mediated transactivation by protein-protein interactions without inhibition of HNF4␣ DNA binding. Furthermore, our results indicate that the N-and C-terminal regions of TR4 protein are required for TR4-HNF4␣ interaction. It is possible that TR4-HNF4␣ interaction may block the HNF4␣ function that results in the suppression of HBV gene expression. Together, these results demonstrate that TR4 can serve as a negative modulator in the transcriptional regulation of HBV core gene expression.Hepatitis B virus (HBV) 1 is a small virus with a 3.2-kb partially double-stranded DNA genome, containing four open reading frames: the surface antigen, the core antigen, the polymerase, and the X protein (1, 2). HBV is a major pathogen causing acute and chronic liver diseases, such as cirrhosis and hepatocellular carcinoma (3, 4). HBV transcripts are regulated by the transcriptional control of four different promoters and two enhancer elements (5). HBV is replicated from a RNA intermediate as a template for reverse transcription (1). The core promoter controls the expression of the 3.5-kb core mRNA (C mRNA) as the template for replication, and the expression of the pre-core mRNA (pre-C mRNA) for the translation of the HBeAg precursor (6). Recently, multiple binding sites for liverspecific or ubiquitous transcription factors and several hormone response elements (HRE) have been identified in the core promoter region, including Sp1 (7, 8), TATA-binding protein (9), HNF3 (10), HNF4␣ (11), C/EBP (12), and other members of the nuclear receptor superfamily, such as the retinoid X receptor (RXR␣), peroxisome proliferator-activated receptor (PPAR␣), COUP-TF1, and ARP1 (13). For example, HNF4␣ and RXR␣/PPAR␣ can stimulate the expression of the 3.5-kb core RNA, COUP-TF1 suppresses the expression of both the pre-C RNA and C RNA, and TR2 preferentially represses the expression of ...