In this paper we report the first crystal structure of a prokaryotic sucrose synthase from the nonphotosynthetic bacterium Nitrosomonas europaea. The obtained structure was in an open form, whereas the only other available structure, from the plant Arabidopsis thaliana, was in a closed conformation. Comparative structural analysis revealed a "hinge-latch" combination, which is critical to transition between the open and closed forms of the enzyme. The N. europaea sucrose synthase shares the same fold as the GT-B family of the retaining glycosyltransferases. In addition, a triad of conserved homologous catalytic residues in the family was shown to be functionally critical in the N. europaea sucrose synthase (Arg567, Lys572, and Glu663). This implies that sucrose synthase shares not only a common origin with the GT-B family but also a similar catalytic mechanism. The enzyme preferred transferring glucose from ADP-glucose rather than UDP-glucose like the eukaryotic counterparts. This predicts that these prokaryotic organisms have a different sucrose metabolic scenario from plants. Nucleotide preference determines where the glucose moiety is targeted after sucrose is degraded.
IMPORTANCEWe obtained biochemical and structural evidence of sucrose metabolism in nonphotosynthetic bacteria. Until now, only sucrose synthases from photosynthetic organisms have been characterized. Here, we provide the crystal structure of the sucrose synthase from the chemolithoautotroph N. europaea. The structure supported that the enzyme functions with an open/close induced fit mechanism. The enzyme prefers as the substrate adenine-based nucleotides rather than uridine-based like the eukaryotic counterparts, implying a strong connection between sucrose and glycogen metabolism in these bacteria. Mutagenesis data showed that the catalytic mechanism must be conserved not only in sucrose synthases but also in all other retaining GT-B glycosyltransferases.
In plants, sucrose is a major photosynthetic product and plays a key role not only for carbon partition but also in sugar sensing, development, and regulation of gene expression (1-3). It was first thought that sucrose metabolism was a characteristic of plants, but it was later found in other oxygenic photosynthetic organisms (4, 5). In the last decade, Salerno and coworkers demonstrated the importance of sucrose for carbon and nitrogen fixation in filamentous cyanobacteria (6, 7). More recently, genomic and phylogenetic analyses revealed the existence of sucrose-related genes in nonphotosynthetic prokaryotes such as proteobacteria, firmicutes, and planctomycetes (4, 5, 8). It has been suggested that these organisms acquired the genes of sucrose metabolism by horizontal gene transfer (4,5,8). However, analysis of the enzymes encoded by such genes is currently lacking.Nitrosomonas europaea is a chemolithoautotrophic bacterium that obtains energy by oxidizing ammonia to hydroxylamine and nitrite in the presence of oxygen (9). It is a member of the betaproteobacteria group with a putati...