The size and chemical composition of leachates migrating into the aquifer are dependent on the parameters of the waste and the storage conditions. Lysimeter studies allow us to determine the size and chemical composition of leachates as well as the leachate water balance. Lysimeter studies were conducted on a 230-L municipal waste sample for 6 months. During the tests, the specific electrolyte conductivity, pH, Eh, and temperature, as well as the chemical composition, microbiological analysis, and profiling of physiological population level using EcoPlate™ microarrays were measured in collected leachate samples. During the entire experiment, the amounts of inflow and outflow from lysimeters were measured. To assess the existence of significant differences in the chemical component concentrations in leachates, use of Principal Component Analysis was taken into account. The maximum EC value from leachate from the lysimeter was 33 mS/cm. High concentrations of ammonium ion (up to approx. 1400 mg dm −3), chlorides (up to approx. 6800 mg dm −3), and iron (up to approx. 31 mg dm −3) were observed in the effluents. The number of enterococci in May reached 53,000 cells/100 ml. By contrast, the number of these microorganisms was about 15,000 and 16,000 CFU/100 ml in January and April, respectively. Community-level physiological profiling indicates that the activity and functional diversity of microorganisms were higher in the leachate samples obtained in winter compared to effluents collected from lysimeters in spring.